Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01297 ATGGTTAAAGTTCCAGATTTTCCGGAAGGGTCCCCTGTTACTCAAGACATATGCAGAAGCCAGTGCTTGAAGAATTGTCCTTGTGTTGCATATTCTCACGAGGATGGCATTGGTTGTATGTCTTGGACTGAGAATCTACTTGACATACAACAATTCTCAACCGGAGGACTTGATCTATATGTTCGTGTGGCCCATTCTGAACTTGGTAAAGGAAAAAATACAACAATCATTATTACAATTACAGTCATAATAGGAACTGTCATCATTGTTACTTGTGCCTTTGTCATGTGGAGGATTTCCAATCACCCGGCTAAATTATGGCACTTAATTAAATCAGAAAGGAACAGGAACAACGAGGCTATCCAACAATTTAATAATGGTGAATCATCAGAACATCCAATCCACTCAGTCATTGAAGAACTGTCACAAGTTAAACTCCAGGACATGTTACTGTTTGATTTCGAAAGAGTTGCAAGAGCAACAAACAACTTCCACCTGTCGAACAAACTTGGGCAGGGTGGTTTTGGTCCTGTGTACAAGGGGAAACTGCAAGATGGACAGGAAATAGCAGTTAAAAGACTTTCCAGAGCATCTGGACAAGGTCTAGAAGAATTCATGAATGAAGTAGTGGTGATTTCCAAGCTTCAACACCGCAATCTTGTAAGACTATTTGGCTGCTGTGTTGAAGGTGATGAAAAGATGTTGATATATGAATACATGCCAAATAAAAGTTTGGATGTGTTTATCTTTGATCCATCAAAAAATAAAGTCCTTGATTGGAGAAAACGCTTTAACATTATAGAGGGAGTGGCTCGAGGAATGCTTTATCTTCATAGAGATTCCAGGCTAATAATCATGCACAGGGACTTGAAGGCAAGTAATATCTTGCTAGATGTGGAGCTAAATCCAAAAATATCAGACTTTGGTATGGCAAGAATTTTTTGTGAGAATGAGGATCGGGCTAATACCAGAAGAGTTGTTGGAACATACTTTGGAGTTTTGCTATTGGAGATTGTTAATGGAAGACGGAATTCCAGCTTTTATGATGAAGAGAATTCTCTTACTCTTTTAGGATTTGCCTGGATACAGTGGACAGAACACAATATTTCATCTCTAATAGATGAAGGAATATATGATCCTAGTCTTCATAAATATATTTTTAGGTGCATACACATAGGACTTCTATGTGTACAAGAATTTGCTGCAGATAGGCCCTCTATGGCTGCTGTAATTTCAATGCTTAACAGTGAGATTGTGGATCTTCCTCCACCAACGAAACCTGCATTCACTCTGAGACAAAATATGTTAAGTTCAATGTCCTTTGTAAGAAGCAATGACCTGAACTCCCATAACTCTGTCAGTATTTCGGACATCCAAGGAAAATAG 1386 0.386 MVKVPDFPEGSPVTQDICRSQCLKNCPCVAYSHEDGIGCMSWTENLLDIQQFSTGGLDLYVRVAHSELGKGKNTTIIITITVIIGTVIIVTCAFVMWRISNHPAKLWHLIKSERNRNNEAIQQFNNGESSEHPIHSVIEELSQVKLQDMLLFDFERVARATNNFHLSNKLGQGGFGPVYKGKLQDGQEIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVRLFGCCVEGDEKMLIYEYMPNKSLDVFIFDPSKNKVLDWRKRFNIIEGVARGMLYLHRDSRLIIMHRDLKASNILLDVELNPKISDFGMARIFCENEDRANTRRVVGTYFGVLLLEIVNGRRNSSFYDEENSLTLLGFAWIQWTEHNISSLIDEGIYDPSLHKYIFRCIHIGLLCVQEFAADRPSMAAVISMLNSEIVDLPPPTKPAFTLRQNMLSSMSFVRSNDLNSHNSVSISDIQGK 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01297 461 ProSiteProfiles PAN/Apple domain profile. 1 64 IPR003609 -
Cca07g01297 461 ProSiteProfiles Protein kinase domain profile. 164 461 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01297 461 Gene3D Transferase(Phosphotransferase) domain 1 331 421 - -
Cca07g01297 461 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1 330 - -
Cca07g01297 461 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 331 460 - -
Cca07g01297 461 SMART serkin_6 164 386 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01297 461 Pfam Protein tyrosine and serine/threonine kinase 165 319 IPR001245 GO:0004672|GO:0006468
Cca07g01297 461 CDD PAN_AP_plant 1 64 - -
Cca07g01297 461 SUPERFAMILY Protein kinase-like (PK-like) 152 446 IPR011009 -
Cca07g01297 461 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 1 330 - -
Cca07g01297 461 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 331 460 - -
Cca07g01297 461 ProSitePatterns Serine/Threonine protein kinases active-site signature. 285 297 IPR008271 GO:0004672|GO:0006468
Cca07g01297 461 Gene3D Phosphorylase Kinase; domain 1 138 239 - -
Cca07g01297 461 Gene3D Transferase(Phosphotransferase) domain 1 240 330 - -
Cca07g01297 461 Pfam PAN-like domain 2 49 IPR003609 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01297 Cca-Chr7 33400233 33434354 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01297 66 432 Receptor kinase-like Gene Family AT4G05200 46.154 1.61e-115 353
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca07g01297 PK_Tyr_Ser-Thr 4.6e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01297 - - gmx:100779455 684.485