Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01293 ATGTGTTTCAGACACCGTGCAAACTTGTTCTTTGTTCTGTTCATACTTTGTCGTTATGTGTTGGACGTTGGTATTGCCATAGACAGCATCACATCATCGCAATCCATGAAGGACCCTGATACTCTAAGTTCCAAAGATGGCAACTTCACGTTGGGATTCTTCACCCCTCAAAACTCCACAAAACGCTACGTTGGAATTTGGTGGAAGTCTGAGTCTACAGTCATATGGGTTGCTAACAGAGACCAACCACTGAATGATTCTTCTGGAGTTGTTACAATTTCTGAAGATAGCAATCTTGTGGTGCTGAATGGACAGAAACAAGTTATTTGGTCAACGAATGTGTCCAACATAACATCCAACGCAAGTTCCCAGTTTTCAGACTCTGGTAAGCTCGTTCTCACAGAAACCACAAGGGGAACCATCTTATGGGATAGTTTTCAGCAACCTTCAAATTCATTATTGCCAAGCATGAAACTTTCACTCAATATAAGAATAGGTGAGAAAGTAGAACTTACATCATGGAAAAGCCCTTCTAATCCCTCCGTTGGAAGCTTCTCTCTTAGTCTCGTTCAACGCATAAATATAATTGAAGTGTTCATTTGGAATGAAACTCGACCATTCTGGCGCAGTGGTCCATGGAGTGGTGGGGTATTTAAAGGGATACCAACGATGTCAACATATCTTGATGGTTTCAAAGGTGGTGATGATGGAGAGGGGAATGCAAATATCTATTACACAGTGCCAACAGATACAGAATttgtagtctatatattgaattcgcaaggccgatttgaacaaacatggtgggatgatgagaagaaaggaatggaagttacgtggaccagtcgaaaatccgattgtgatgtttatggtatgtgtggaccttttgcaagttgtaattcacagaggtcaccaatatgtagctgtttgaaagggtttgaaccaaggaacaaagaggagtggaatagacagaactggactagtggatgtgttaggagaacacgtttgaagtgtgaaagggtcaaagatcagaacacaagtatagatacaaaggaagatgggtttctGAAACTGCAGATGATTAAAGTTCCAGATTTTGAAGAAGGGTCACCTGTTCCGCCAGACATATGCAAAAGCCAATGCTTGGATAATTGCTCTTGTATTGCTTACTCTCACGATGATGAGATTGGTTGTATGTCTTGGACAGAGAATCTACTTGACATACAACAATTCTCAGAAGGAGGACTTGAGCTATATATTCGTGTGGCCAACTCTGAACTTGATAAAGGGACAAATAGAACAATGATCATTACAATAACAGTGATAATAGGAACTGTCATCCTTGTTACTTGTGCATATGTCATGTGGAGGACTTCCAATCACCCAGCTAAAATATGGCGAGCGATCAAATCAGCAAGGAAGAGGAACAACAAAGCTATCCTACTATCTAACAGTGGTGGTGAGACACCAGAACAACCAAGCCACAGCGTAATTGAAGAACTGTCACAAGTTAAACTACAGGAGCTGTTACTATTTGATTTTGAAAGGGTTGCTACAGTCACAAACAACTTCCACCTGTCCAACAAACTTGGGCAGGGTGGTTTTGGTCCAGTGTACAAGGGTAAACTGCAAGATGGACAGGAAATAGCTGTTAAAAGACTTTCTAGAGCATCTGGACAAGGTCTAGAAGAATTCATGAATGAAGTAGTGGTGATTTCCAAGCTTCAACACCGAAATCTTGTAAGACTTTTTGGCTGCTGTGTTGAAGGTGATGAAAAGATGTTAATATATGAATACTTGCCAAACAAAAGTTTGGATGTTTTTGTCTTTGATCCGTCAAAAAGTAAACTCCTAGATTGGAGTAAGCGTTGTAGCATAATAGAAGGAATAGCTCGAGGATTGCTCTATCTTCACAGAGATTCCAGACTAAGAATCATACACAGAGATTTGAAGGCAAGTAATATCCTGTTAGATGAAGAAATGAATCCAAAAATTTCGGACTTTGGTATGGCTAGAATCTTTGGAGGGAGTGAAGATGAAGCCAATACTAAAAGAGTTGTAGGAACCTATGGCTATATGTCTCCTGAATATGCAATGCAAGGAATGTTTTCAGAAAAATCAGATGTCTTTAGTTTTGGTGTTTTGATACTAGAGATTGTTAGTGGGAGAAGAAACTCAAGCTTTTATGATGATGAGGGTGCTCTTAGTCTGTTAGGATTTGCCTGGATACAATTGAAGGAAGGCAATATATTATCTATAATAGATCAAGGAATATATGATCCAAGTCATCATAAAGATATTTTGAGGTGCATACACATAGGACTTCTTTGTGTACAAGAACATGCTGCAGAACGGCCCACTATGGCTTTAGTAATTTCTATGCTTAATAGTGAAGTTGCGTTTCTTCCTCCTCCAAGTCAACCTGCATTCATCCGGAAGCAAAATATGTTGAATTCGGTGTCATCTGAAGAGCTTAATAGATTTTCCTCCGTCAATACTATTAGCACTACAACTATCCATGGTAGATAA 2529 0.3472 MCFRHRANLFFVLFILCRYVLDVGIAIDSITSSQSMKDPDTLSSKDGNFTLGFFTPQNSTKRYVGIWWKSESTVIWVANRDQPLNDSSGVVTISEDSNLVVLNGQKQVIWSTNVSNITSNASSQFSDSGKLVLTETTRGTILWDSFQQPSNSLLPSMKLSLNIRIGEKVELTSWKSPSNPSVGSFSLSLVQRINIIEVFIWNETRPFWRSGPWSGGVFKGIPTMSTYLDGFKGGDDGEGNANIYYTVPTDTEFVVYILNSQGRFEQTWWDDEKKGMEVTWTSRKSDCDVYGMCGPFASCNSQRSPICSCLKGFEPRNKEEWNRQNWTSGCVRRTRLKCERVKDQNTSIDTKEDGFLKLQMIKVPDFEEGSPVPPDICKSQCLDNCSCIAYSHDDEIGCMSWTENLLDIQQFSEGGLELYIRVANSELDKGTNRTMIITITVIIGTVILVTCAYVMWRTSNHPAKIWRAIKSARKRNNKAILLSNSGGETPEQPSHSVIEELSQVKLQELLLFDFERVATVTNNFHLSNKLGQGGFGPVYKGKLQDGQEIAVKRLSRASGQGLEEFMNEVVVISKLQHRNLVRLFGCCVEGDEKMLIYEYLPNKSLDVFVFDPSKSKLLDWSKRCSIIEGIARGLLYLHRDSRLRIIHRDLKASNILLDEEMNPKISDFGMARIFGGSEDEANTKRVVGTYGYMSPEYAMQGMFSEKSDVFSFGVLILEIVSGRRNSSFYDDEGALSLLGFAWIQLKEGNILSIIDQGIYDPSHHKDILRCIHIGLLCVQEHAAERPTMALVISMLNSEVAFLPPPSQPAFIRKQNMLNSVSSEELNRFSSVNTISTTTIHGR 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01293 842 Pfam PAN-like domain 350 408 IPR003609 -
Cca07g01293 842 SUPERFAMILY alpha-D-mannose-specific plant lectins 64 180 IPR036426 -
Cca07g01293 842 ProSiteProfiles PAN/Apple domain profile. 338 423 IPR003609 -
Cca07g01293 842 CDD PAN_AP_plant 349 423 - -
Cca07g01293 842 Pfam Protein tyrosine and serine/threonine kinase 525 794 IPR001245 GO:0004672|GO:0006468
Cca07g01293 842 Pfam D-mannose binding lectin 73 175 IPR001480 -
Cca07g01293 842 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 22 839 - -
Cca07g01293 842 SMART ntp_6 350 422 IPR003609 -
Cca07g01293 842 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Cca07g01293 842 SMART blect_4 33 149 IPR001480 -
Cca07g01293 842 CDD STKc_IRAK 530 796 - -
Cca07g01293 842 SUPERFAMILY Protein kinase-like (PK-like) 509 830 IPR011009 -
Cca07g01293 842 Gene3D Transferase(Phosphotransferase) domain 1 600 800 - -
Cca07g01293 842 SMART serkin_6 524 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01293 842 Gene3D Phosphorylase Kinase; domain 1 498 599 - -
Cca07g01293 842 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 22 839 - -
Cca07g01293 842 ProSitePatterns Serine/Threonine protein kinases active-site signature. 645 657 IPR008271 GO:0004672|GO:0006468
Cca07g01293 842 ProSiteProfiles Protein kinase domain profile. 524 802 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01293 842 CDD B_lectin 41 149 IPR001480 -
Cca07g01293 842 PIRSF SRK 1 842 IPR024171 GO:0004674
Cca07g01293 842 Gene3D - 23 147 IPR036426 -
Cca07g01293 842 Pfam S-locus glycoprotein domain 208 316 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01293 Cca-Chr7 33329531 33332970 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01293 425 813 Receptor kinase-like Gene Family AT4G05200 50.128 6.00e-126 392
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca07g01293 PK_Tyr_Ser-Thr 4.7e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01293 - - gmx:100779455 1375.53