Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01286 ATGTTAAGGGACTTGAGTTTAAGAATCCTCCAATTTAACAGAGGAAGAGCACCTGTAGAATGTACAAATGACGATGTATTTGGAGATCTGTCACAAGTCAAACTCCAGGAGCTATTAATATTTAGTTTTGAAAAGATTGTAACTGCCACTAACAACTTTCACCCATCCAACAGGATTGGACAGGGTGGTTTTGGTCCAGTATACAAGGGTAAATTGCAAGATGGTCAGGAAATTGCAGTTAAAAGACTTTCTCGAACATCTGGACAAGGTGTAGGAGAATTCATGAATGAAGTAGTAGTAATTTCTAAGCTGCAACACCGCAATCTTGTGAGACTTCTTGGCTGCTGTATTGAAGGGGAGGAAAAGATGTTGATTTATGAGTACATGCCAAATAAAAGTTTGGATGCATATGTCTTTGATCTGACGAAAAATATAGTCCTTGATTGGAGAAAACGCTTTAGCATAATAGAAGGAGTGGCTCGAGGAATGCTTTATCTTCATAGAGATTCCAGGCTAAAAATCATCCACAGGGACTTGAAGGCAAGTAACATCTTGCTAGATGAGGAGTTAAATCCGAAAATATCCGACTTTGGTATGGCTAGAATCTTTGGTGGAAATGAGGATCAGGCTAATACTAGAAGAGTTGTTGGAACATATGGTTATATGTCTCCTGAATACGCAATGCAAGGACTATTTTCTGAGAAATCAGATGTCTTTAGCTTTGGAGTTTTGCTGCTGGAGATTGTTAGTGGAAGACGAAATTCAAGCTTCTATGACAGCGAGAATTTTTTGACCCTTTTAGGATTTGTTTGGATGCGGTGGATGGAAAATAATATATTATCTATAATAGATCCAAGAATATATGATCCTAGTCTTCATAAAGATATTTTGAGGTGCATACACATAGGACTTCTATGTGTGCAAGAATTTGTTGCAGAAAGGCCCACTATGGCTACTGTAATTTCTATGCTTCAAAGTGAGATTATGAATCTTCCTCCTCCAACAAAACCTGCGTTCACCCTAAGGCATAATATGTTAAGATCAATGTCCTTTGCAATTGTTAGCATTTCAAGCATTCAAGGAAGATAG 1089 0.3783 MLRDLSLRILQFNRGRAPVECTNDDVFGDLSQVKLQELLIFSFEKIVTATNNFHPSNRIGQGGFGPVYKGKLQDGQEIAVKRLSRTSGQGVGEFMNEVVVISKLQHRNLVRLLGCCIEGEEKMLIYEYMPNKSLDAYVFDLTKNIVLDWRKRFSIIEGVARGMLYLHRDSRLKIIHRDLKASNILLDEELNPKISDFGMARIFGGNEDQANTRRVVGTYGYMSPEYAMQGLFSEKSDVFSFGVLLLEIVSGRRNSSFYDSENFLTLLGFVWMRWMENNILSIIDPRIYDPSLHKDILRCIHIGLLCVQEFVAERPTMATVISMLQSEIMNLPPPTKPAFTLRHNMLRSMSFAIVSISSIQGR 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01286 362 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 345 - -
Cca07g01286 362 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 16 345 - -
Cca07g01286 362 SMART serkin_6 53 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01286 362 Gene3D Phosphorylase Kinase; domain 1 29 128 - -
Cca07g01286 362 Pfam Protein tyrosine and serine/threonine kinase 56 322 IPR001245 GO:0004672|GO:0006468
Cca07g01286 362 CDD STKc_IRAK 59 325 - -
Cca07g01286 362 ProSitePatterns Serine/Threonine protein kinases active-site signature. 174 186 IPR008271 GO:0004672|GO:0006468
Cca07g01286 362 Gene3D Transferase(Phosphotransferase) domain 1 129 331 - -
Cca07g01286 362 ProSiteProfiles Protein kinase domain profile. 53 346 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01286 362 SUPERFAMILY Protein kinase-like (PK-like) 37 351 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01286 Cca-Chr7 33088164 33094658 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01286 29 342 Receptor kinase-like Gene Family AT4G05200 57.006 1.39e-130 387
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca07g01286 PK_Tyr_Ser-Thr 1.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01286 - - gmx:113002415 539.265