Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01285 ATGGGTTTCACCAAGTGCACAAATTCGCTCTTCTTTTTGATCATACTATGTTTTCTTTTTTCAGATGTTGGTGCTGCCACAAACACCATCACCTCATCTCAGTTCATCAAGGACCCTGAAACTATAACCTCCAGAGGTGGTAACTTCACCTTGGGGTTCTTCACCCCTCAGAATTCTACAAACCGCTACGTTGGAATTTGGTGGCAGCCCAAATTCACTGTCATATGGGTGGCTAACAGAAACCAACCCCTGAGAGATTCTTCTGGAGTTGTTACCATTTCTGAAGATGGCAATCTTGTGGTATTGAATGGGCAGAAACAGGTTATTTGGTCATCAAATGTGTCCAATATTGGATCCAACTCTAGTTCCAAACTCTTAGATTCTGGGAATCTTGTACTACTTGAAAGCACAACAGAAACCAACATATGGGAGAGTTTCCAACATCCTTCCAATGCAATGTTACCCAATATGAAGCTTACAACTAGCAAAGTTACAGGTGAGAAAGTAAAACTAACTTCATGGAAAAGCCCTTTTGATCCATCCATTGGGAGCTTCTCTTTAAGTGTTGAACGCCTTAGTATACCTGAAGTGTTCATTTGGAATGAAACTCGCCCATTCTGGCGCACTGGTCCGTGGAATCGTAAGGCCTTTACAGGGCTTCCCTACATGACATCATTTTATCTTACTGGGGTACAGATTGCAGATGATGGGCAAGCAAATGTTGAATTCTTTTTTACAAAAATAGAAGAGGTGGGCTTGTTAATCTATGTTCTGAATTCAACAGGCAATTGTGAAGAGAGATGGTGGAATGAAGAGAAGATGGATTGGGCAGTAACATGGAATAGTCATCAATTTGAGTGTGACGTTTATGGTGTGTGTGGTCCTTTTGCGATCTGTAATTCACAGAGCTCACCAATATGTAGCTGTTTGAAAGGGTTTGAGCCAAGGAACAGAGAGGAATGGAATAGACAGAACTGGACTAGTGGATGTGTTAGGAGCACAAGTTTGCAGTGTGTAAGAGTCAACAGCCAGAACACAAGTGCAGATAATAAAGCAGATGGCTTTTTGAAACTGTCAATGGTCAAAGTTCCAGATTTTGCAGATGGGTCATCTCTCAGTCTTCAACCAGACACTTGCAGAAGCCGATGCTTGGAGAATTGTTCTTGTGTAGCATATTCATATGATGCTGATATTGGTTGCATGTCTTGGACTGGAAATCTAATTGATATACAACAATTCTCAAACGGTGGACTTGATCTTTATGTTCGTGTAGCCTACACTGAACTTGATAAGAAAAGAAACAGGACAATCATCATTACTATTATTACAGTGACAACAGGAATTGCCTTAATTGTCCTTTGTGCGTACATCATTTGGAGAAGGATTCCTAATCACCAGGTAAGTGGGATCCTCAAAGGATTCCTCCAATTTAATGGAGGAGGTGGAGCACCGGCAGAATATTCAAGTGACAATGTATTTGGAGATCTGTCACAAGTCAAACTCCAGGAGCTATTAATACTTAATTTTGGAAAGCTTGTAACTTCCACAAACAACTTTCATCCATCTAACAAACTTGGAGAGGGTGGTTTTGGTCCAGTATACAAGGGTAAATTGCCAGATGGTCAGGAAATTGCTGTTAAAAGACTTTCTAAGACATCTGGACAGGGTCTAGAAGAATTCATGAATGAAGTGGTGGTCATTTCCAAGCTTCAACACCGCAATCTTGTAAGACTTCTTGGCTGTTGCACTACAGGGGAGGAAAAGATGTTGATTTATGAGTACATGCCAAATAAAAGCTTGGACGCATACATCTTTGATCCATCAAAAACTAAAGTCCTTGATTGGAGAAAACGCTTTAGCATTATAGAGGGAGTGGCTCGAGGAATGCTTTATCTTCATAGAGATTCCAGGCTAAAAATCATCCACAGGGACTTGAAGGCAAGTAATATCTTGTTAGATGTGGATCTAAATCCAAAAATATCAGACTTTGGTATGGCAAGAATCTTTGGTGGGAATGAGGATCGGGCTAATACCAGAAGAGTTGTTGGAACATATGGTTATATGTCTCCAGAATATGCGATGCAAGGACAATTTTCTGAAAAATCAGATGTCTTTAGCTTTGGAGTTTTGCTATTGGAGATTGTTAGTGGAAGACGGAATTCTAGCTTTTATGATGAAGAGAATTCTCTTACTCTTTTAGGATTTGCCTGGATTCAGTGGACAGAACACAATATTTCATCTCTAATAGATGAAGGAATATATGATCCTAGTCTTCATAAATATATTTTTAGGTGCATACACATAGGACTTCTATGTGTACAAGAATTTGCTGCAGATAGGCCCTCTATGGCTGCTGTAATTTCAATGCTTAACAGTGAGATTCTGGATCTTCCTCCACCAACGAAACCTGCATTCACTCTGAGACAAAATATGTTAAGTTCAATGTCCTTTGTAAGAAGCAATGGCCTGAACTCCCTTAACTCTGTCAGCATTTCGGACATCCAAGGCAGATAG 2514 0.4018 MGFTKCTNSLFFLIILCFLFSDVGAATNTITSSQFIKDPETITSRGGNFTLGFFTPQNSTNRYVGIWWQPKFTVIWVANRNQPLRDSSGVVTISEDGNLVVLNGQKQVIWSSNVSNIGSNSSSKLLDSGNLVLLESTTETNIWESFQHPSNAMLPNMKLTTSKVTGEKVKLTSWKSPFDPSIGSFSLSVERLSIPEVFIWNETRPFWRTGPWNRKAFTGLPYMTSFYLTGVQIADDGQANVEFFFTKIEEVGLLIYVLNSTGNCEERWWNEEKMDWAVTWNSHQFECDVYGVCGPFAICNSQSSPICSCLKGFEPRNREEWNRQNWTSGCVRSTSLQCVRVNSQNTSADNKADGFLKLSMVKVPDFADGSSLSLQPDTCRSRCLENCSCVAYSYDADIGCMSWTGNLIDIQQFSNGGLDLYVRVAYTELDKKRNRTIIITIITVTTGIALIVLCAYIIWRRIPNHQVSGILKGFLQFNGGGGAPAEYSSDNVFGDLSQVKLQELLILNFGKLVTSTNNFHPSNKLGEGGFGPVYKGKLPDGQEIAVKRLSKTSGQGLEEFMNEVVVISKLQHRNLVRLLGCCTTGEEKMLIYEYMPNKSLDAYIFDPSKTKVLDWRKRFSIIEGVARGMLYLHRDSRLKIIHRDLKASNILLDVDLNPKISDFGMARIFGGNEDRANTRRVVGTYGYMSPEYAMQGQFSEKSDVFSFGVLLLEIVSGRRNSSFYDEENSLTLLGFAWIQWTEHNISSLIDEGIYDPSLHKYIFRCIHIGLLCVQEFAADRPSMAAVISMLNSEILDLPPPTKPAFTLRQNMLSSMSFVRSNGLNSLNSVSISDIQGR 837
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01285 837 CDD PAN_AP_plant 334 425 - -
Cca07g01285 837 Gene3D Transferase(Phosphotransferase) domain 1 595 796 - -
Cca07g01285 837 Gene3D Phosphorylase Kinase; domain 1 487 594 - -
Cca07g01285 837 SMART serkin_6 519 762 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01285 837 ProSiteProfiles PAN/Apple domain profile. 338 425 IPR003609 -
Cca07g01285 837 SMART blect_4 33 149 IPR001480 -
Cca07g01285 837 SUPERFAMILY Protein kinase-like (PK-like) 506 820 IPR011009 -
Cca07g01285 837 ProSitePatterns Serine/Threonine protein kinases active-site signature. 640 652 IPR008271 GO:0004672|GO:0006468
Cca07g01285 837 Pfam D-mannose binding lectin 73 175 IPR001480 -
Cca07g01285 837 ProSiteProfiles Bulb-type lectin domain profile. 27 146 IPR001480 -
Cca07g01285 837 Pfam Protein tyrosine and serine/threonine kinase 522 790 IPR001245 GO:0004672|GO:0006468
Cca07g01285 837 ProSiteProfiles Protein kinase domain profile. 519 795 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01285 837 CDD STKc_IRAK 525 791 - -
Cca07g01285 837 Pfam S-locus glycoprotein domain 207 316 IPR000858 GO:0048544
Cca07g01285 837 Gene3D - 21 147 IPR036426 -
Cca07g01285 837 Pfam PAN-like domain 350 410 IPR003609 -
Cca07g01285 837 SUPERFAMILY alpha-D-mannose-specific plant lectins 65 180 IPR036426 -
Cca07g01285 837 CDD B_lectin 33 149 IPR001480 -
Cca07g01285 837 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 22 836 - -
Cca07g01285 837 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 22 836 - -
Cca07g01285 837 SMART ntp_6 350 424 IPR003609 -
Cca07g01285 837 PIRSF SRK 2 837 IPR024171 GO:0004674
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01285 Cca-Chr7 33081353 33085149 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01285 427 808 Receptor kinase-like Gene Family AT4G05200 50.521 1.59e-126 394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca07g01285 PK_Tyr_Ser-Thr 4e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01285 - - mtr:MTR_7g056430 1247.65