Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01279 ATGGAAGGTCGCCGGAGGGTAACGCTACATGAACAAATGTCAGCATCGGAGAGCAGCCGAGCCCGAGAGCTAGCTGGCTTGACCCTTGACGACGTGTTAGCCAACCAGAAGAGACATTTCTCGTTAACGCCACACACCCCACAACCTCCCAAGAATCGAACCCTCCTTGACATCATCAAAGACGACGAAACCAACAAGAAGGACCGCAGGTCTTGGAAAGCCTTCAAGGACAAGCTACGGCTGAAGCGTGCAGGTTCTGCTTGGACATCGTCAATTGATATTCCCACATCGGATGTCCCTGTCCCTCACCCCAATAGCAGAAGCTTCACCCAGTTTGGTCGCCGCAACTCGGTCCGATTCCCGACTCACCCCGACTCGGCCATCTCAAACAACTACATGGATCACCAAGTAGAAGACCTAGACCCCAACCCCGACGCGGCCTCTTCTCCGCCGGCGCCGTTCCGGCGGGGGCGCGTGGTGACGTTCCGCGACAGCTTCgacgacgaggagacgaacgacgaggagaagccggacggggggaggacgctgtcggcgagggaggcggtggcggcgcaggaggcggcggaggcggcggcgcaggcggaggcggatgaggaggaggaggagggggggcgggggGCTCCGGTGATGTCGCTGATGGATTTGTTGGAGGAGACTGATAGGGAGATGGGGCTTGAAGGGTCGAGGTATATATTGAGCgatgatgatgatgattttgatgatgatgatgatggtgaaggggatgatgatgaGACTGGACATGGTTCCATGGAGCATACTTGCTGCATTTGCCTGGTCAGGCATAAGGCTGCTGCTTTTATACCCTGTGGACACACTTTCTGCAGGATGTGTTCAAGGGAGCTTATGGTTAGTAGAGGGAATTGCCCACTCTGCAACAATTTCATTTTGGAGGTTCTTGAAATTTTCTGA 951 0.4269 MEGRRRVTLHEQMSASESSRARELAGLTLDDVLANQKRHFSLTPHTPQPPKNRTLLDIIKDDETNKKDRRSWKAFKDKLRLKRAGSAWTSSIDIPTSDVPVPHPNSRSFTQFGRRNSVRFPTHPDSAISNNYMDHQVEDLDPNPDAASSPPAPFRRGRVVTFRDSFDDEETNDEEKPDGGRTLSAREAVAAQEAAEAAAQAEADEEEEEGGRGAPVMSLMDLLEETDREMGLEGSRYILSDDDDDFDDDDDGEGDDDETGHGSMEHTCCICLVRHKAAAFIPCGHTFCRMCSRELMVSRGNCPLCNNFILEVLEIF 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01279 316 MobiDBLite consensus disorder prediction 240 258 - -
Cca07g01279 316 MobiDBLite consensus disorder prediction 236 261 - -
Cca07g01279 316 CDD RING-HC 268 305 - -
Cca07g01279 316 Pfam Zinc finger, C3HC4 type (RING finger) 265 310 - -
Cca07g01279 316 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 244 316 IPR013083 -
Cca07g01279 316 SMART ring_2 268 305 IPR001841 -
Cca07g01279 316 MobiDBLite consensus disorder prediction 1 21 - -
Cca07g01279 316 PANTHER OS01G0917900 PROTEIN 2 316 - -
Cca07g01279 316 MobiDBLite consensus disorder prediction 135 216 - -
Cca07g01279 316 Coils Coil 189 209 - -
Cca07g01279 316 ProSiteProfiles Zinc finger RING-type profile. 268 306 IPR001841 -
Cca07g01279 316 PANTHER OS01G0917900 PROTEIN 2 316 - -
Cca07g01279 316 SUPERFAMILY RING/U-box 267 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01279 Cca-Chr7 32912127 32913669 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01279 4 316 C3H Transcription Factor Family AT3G25030 33.861 2.32e-50 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01279 - - ccaj:109807106 550.436