Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01242 ATGGCAAAGCCAGGGGTGTTGGAGTCTGATCCAGGGGTGATGGTGAAGAAGGCCATAGAGTTGAAGAGGGAACTGCAGAGGCTGGTGAAGTCCATTGTGGATGATGAGGATTGCAGCACTGAGATCATTGATCAAGCAAGAGAGACTCTCTGTGTTCTCAAGGAGTTGAAGCTCAGAAAAAGGTCTTCACTGTCTTTGAAGCTGCACAATAAGAGTGTCACCTCTTGCCCTGACGAATTCAAGTGTCCACTTTCCAAGGAGTTGATGAGAGATCCTGTCATTGTGGCTTCTGGTCAGACATATGATAGACCTTTCATCCAAAAATGGCTAAATGCTGGAAATAGGACTTGCCCTCGAACACATCAAGTCCTCTCACACACACTGCTTATACCAAATCACCTCATAAGGGAAATGATAGAACAATGGACTAAAAATCAAGGAATTGAGTTGTCAAATACAGTTCAATACATTGATGAGGATGGTTTAAACGAAGCCGATCGCGAACATTTTCTATGTTTGCTCAAGAAAATGTCTTCAACACTTTCTGATCAGAAGACAGCAGCGAAGGAATTGCGCTTGTTGACAAAGAAACATCCTTGTTTCCGTGTACTTTTCTGTGATTCTGCAGATGCCATTCCTCAATTGCTTAAACCAATTTGTGGCAGTGATTCTTTTAGTAGCATTCACCCTGATCTCCAAGAAGATGTGATCACAACCCTCCTCAATATCTCTATTCATGACAACAACAAAAAACTAGTGGCTGAAACTCCAATGGTGATTCCACTCCTTATGAGAGCATTGAGATCAGGCACAATTGAAACAAGAAGCAATGCTGCAGCAGCCCTTTTCACCTTGTCAGCTCTTGACTCAAACAAGGAACTCATAGGGAAATCCGGCGCATTAAAGCCGTTAATCGACCTCTTGGAAGAAGGGCATCCCTTAGCCATGAAGGATGTTGCTTCAGCAATTTTCAACATATGTGTGATGCATGAGAACAAGGCTAGAGCAGTGAAGGACGGCGCGATAAGGGTGATTTTGACAAAAATAAAGAACCAGATTCATGTGGACGAGTTTCTGGCTATCCTTGCACTGCTTTCTACTCATCAGAGGGCTGTTCATGACATGGGAGATCTTGGAGCCGTTCCTAGCTTGCTGAGGATCATCAGAGAAAGCGCGTGCGACCGCAACAAGGAGAATTGTGTGGCAATCCTTCAAACTATTTGTTTGTATGATAGATCAAAGTTGAAGGAAATAAGGGAAGAGGAGAACAGCCACAAAACCATCTCAGAGCTTGCACAGAATGGAACATCAAGGGCCAAGAGAAAAGCTAGTGGAATTCTTGAGAGGTTGAACAGGGTTGTTAATATCACACACACTGCATAA 1383 0.4353 MAKPGVLESDPGVMVKKAIELKRELQRLVKSIVDDEDCSTEIIDQARETLCVLKELKLRKRSSLSLKLHNKSVTSCPDEFKCPLSKELMRDPVIVASGQTYDRPFIQKWLNAGNRTCPRTHQVLSHTLLIPNHLIREMIEQWTKNQGIELSNTVQYIDEDGLNEADREHFLCLLKKMSSTLSDQKTAAKELRLLTKKHPCFRVLFCDSADAIPQLLKPICGSDSFSSIHPDLQEDVITTLLNISIHDNNKKLVAETPMVIPLLMRALRSGTIETRSNAAAALFTLSALDSNKELIGKSGALKPLIDLLEEGHPLAMKDVASAIFNICVMHENKARAVKDGAIRVILTKIKNQIHVDEFLAILALLSTHQRAVHDMGDLGAVPSLLRIIRESACDRNKENCVAILQTICLYDRSKLKEIREEENSHKTISELAQNGTSRAKRKASGILERLNRVVNITHTA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01242 460 Gene3D - 164 354 IPR011989 -
Cca07g01242 460 ProSiteProfiles U-box domain profile. 75 149 IPR003613 GO:0004842|GO:0016567
Cca07g01242 460 Gene3D - 356 455 IPR011989 -
Cca07g01242 460 CDD RING-Ubox_PUB 80 122 IPR045210 -
Cca07g01242 460 SMART arm_5 368 409 IPR000225 GO:0005515
Cca07g01242 460 SMART arm_5 196 245 IPR000225 GO:0005515
Cca07g01242 460 SMART arm_5 246 287 IPR000225 GO:0005515
Cca07g01242 460 SMART arm_5 288 328 IPR000225 GO:0005515
Cca07g01242 460 SMART Ubox_2 79 142 IPR003613 GO:0004842|GO:0016567
Cca07g01242 460 Pfam U-box domain 77 146 IPR003613 GO:0004842|GO:0016567
Cca07g01242 460 SUPERFAMILY RING/U-box 72 150 - -
Cca07g01242 460 Pfam Armadillo/beta-catenin-like repeat 290 327 IPR000225 GO:0005515
Cca07g01242 460 PANTHER U BOX DOMAIN-CONTAINING 5 458 - -
Cca07g01242 460 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 73 149 IPR013083 -
Cca07g01242 460 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 9 5 458 - -
Cca07g01242 460 SUPERFAMILY ARM repeat 172 450 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01242 Cca-Chr7 31557379 31560736 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01242 138 460 U-box Gene Family AT3G07360 61.261 4.02e-131 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01242 - - gmx:100809408 833.172