Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01241 ATGGAACACGGCAAGTTACCAAGAGTCTCAAGTAGTCCATTGCTGAAAACACTTGGATCTCAAATTGGTACCCCGGAGAACAAGAATTCTGCATTTCAGGAGCAGGACAAAATGGAAGTGACCAATTCTCAAGAGGAATCTACAATTTCTGAGCAAACCCCAAATGGAGAAACTGGGGGGAAAACTTCTCAAGATATGAATTCCAGGAAAAGAAAAGCTTCTTCCAAAGGAAAAGCCAAAGAAACTTCAAACTCTACTAATCCCACTAAGGGTGTTGAAGCTAGTGATGATTCAAATTCAAAGCGCTGCAAGACAAATGAGGGTGAAGGAAATGAAAACGGGACAGTGAAAGTTGAGGAAGAGTCTAGAGCAGTGGATGAGAAACAAAAGAAAAGTAACTCAAAACCTCCTGAGCCTCCAAAAGATTACATTCATGTAAGAGCAAGAAGAGGCCAAGCCACTGACAGCCATAGTCTTGCAGAACGTGTACGGAGAGAGAAAATCAGTGAGAGGATGAAGCTGCTCCAAGATCTTGTACCAGGTTGCAACAAGGTCACTGGCAAGGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTGCAACGACAAGTTGAGTTCCTGTCTATGAAGTTGGCTTCTGTTAACACAAGGATGGATCTTAGTATTGAGAGTCTTACTTCAAAAGATGTATTTCAATCAAATAATTCTTTGGCAACACACCCAAATCCAATATTCCCATTAGATTCCTCAGCACAAGCCTTTTATGGACACCAGCCTCAGCAAAATCCATTTATCCATAATAACACACCTAACAGAACGGTGTCCCACTGCTCAGTGGACCCATTAGATACTTCTTTGTGCCAAAATCTTGGCATGCTGTTACCTCCCCTAAATGGGTTTAATGAAGGTGGCTCTCAGTTTCCATTAACATTCTGTGAAGATGACCTCCACACAATTGTTCAGATGGGGTTTGGCCAAACTGCTAACAGGAAAACATCAATACAATCCCCGAGTTTCAACGGTTCAAATAATGCACCACAGATGAAAGTTGAGCTTTGA 1065 0.4141 MEHGKLPRVSSSPLLKTLGSQIGTPENKNSAFQEQDKMEVTNSQEESTISEQTPNGETGGKTSQDMNSRKRKASSKGKAKETSNSTNPTKGVEASDDSNSKRCKTNEGEGNENGTVKVEEESRAVDEKQKKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIESLTSKDVFQSNNSLATHPNPIFPLDSSAQAFYGHQPQQNPFIHNNTPNRTVSHCSVDPLDTSLCQNLGMLLPPLNGFNEGGSQFPLTFCEDDLHTIVQMGFGQTANRKTSIQSPSFNGSNNAPQMKVEL 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01241 354 MobiDBLite consensus disorder prediction 1 143 - -
Cca07g01241 354 Coils Coil 199 219 - -
Cca07g01241 354 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 7 347 IPR024097 GO:0006355
Cca07g01241 354 MobiDBLite consensus disorder prediction 332 354 - -
Cca07g01241 354 MobiDBLite consensus disorder prediction 95 143 - -
Cca07g01241 354 MobiDBLite consensus disorder prediction 13 63 - -
Cca07g01241 354 PANTHER BHLH TRANSCRIPTION FACTOR 7 347 - -
Cca07g01241 354 CDD bHLH_AtBPE_like 142 227 - -
Cca07g01241 354 MobiDBLite consensus disorder prediction 79 94 - -
Cca07g01241 354 Pfam Helix-loop-helix DNA-binding domain 156 203 IPR011598 GO:0046983
Cca07g01241 354 Gene3D - 149 225 IPR036638 GO:0046983
Cca07g01241 354 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 152 202 IPR011598 GO:0046983
Cca07g01241 354 SMART finulus 158 208 IPR011598 GO:0046983
Cca07g01241 354 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 150 221 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01241 Cca-Chr7 31554723 31556782 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01241 5 313 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 46.984 1.46e-72 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca07g01241 HLH 2.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01241 - - ccaj:109814295 691.804