Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01239 ATGGAAAACCAATTCTTTCTCAATGCTGGTGTGCCCCCTCAGCTGCATTTTGAGCCTTCAGCACCACCTCCTTGTCCACCCTCATGGCAATCACTGTCTTCTGCCATGGATGTTCAAGTCACAGTTTTGAATTGTTCGACTGAGCAGACCCAGGATTGCTTCTACACCCCAACATGGGACAAGTCAACGGATCACGGTCTTCAGTTTGATTCAGCACTGAGTTCAATGGTGTCTTCTCCTGCAGCTTCCAATTCCAACATGTCAAGTGAGAATTTTGTCATCAGGGAATTGATTGGAAAATTGGGAAACATtggtggtggtggtggtgatgAGATCTCACCTCATTCTCAGCCTTTGGTTTCTGCATCTCCCTACATCAATGGCAATAACAGCACCAACACTTCATGTTACAGCACCCCTTTGAGTTCTCCTCCAAAGGTGAACATGAACAAGATCCCCTCGGGATTGAACCACTTAGTGAAAGAGGGCATGCCCTTGAATTCCAGTGTAGCAGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGGAGGACCACCCAATTGGGGCTCAACACTAATGCTGAAAATATTTTAATCTAA 639 0.4413 MENQFFLNAGVPPQLHFEPSAPPPCPPSWQSLSSAMDVQVTVLNCSTEQTQDCFYTPTWDKSTDHGLQFDSALSSMVSSPAASNSNMSSENFVIRELIGKLGNIGGGGGDEISPHSQPLVSASPYINGNNSTNTSCYSTPLSSPPKVNMNKIPSGLNHLVKEGMPLNSSVAEFSADPGFAERAAKFSCFGSRSFNGRTTQLGLNTNAENILI 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01239 212 PANTHER BHLH TRANSCRIPTION FACTOR 2 203 - -
Cca07g01239 212 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 203 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01239 Cca-Chr7 31551675 31552313 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01239 1 198 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.118 4.30e-33 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01239 - - gmx:100787699 311.997
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01239 07 31551675 31552313 Cca01g02457 01 53800852 53804320 PCT