Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01231 ATGGAAAACCAATTCTTTCTCAATGCTGGTGTGCCCCCTCAGCTGCATTTTGAGCCTTCAGCACCACCTCCTTGTCCACCCTCATGGCAATCACTGTCTTCTGCCATGGATGTTCAAGTCACAGTTTTGAATTGTTCGACTGAGCAGACCCAGGATTGCTTCTACACCCCAACATGGGACAAGTCAACGGATCACGGTCTTCAGTTTGATTCAGCACTGAGTTCAATGGTGTCTTCTCCTGCAGCTTCCAATTCCAACATGTCAAGTGAGAATTTTGTCATCAGGGAATTGATTGGAAAATTGGGAAACATtggtggtggtggtggtgatgAGATCTCACCTCATTCTCAGCCTTTGGTTTCTGCATCTCCCTACATCAATGGCAATAACAGCACCAACACTTCATGTTACAGCACCCCTTTGAGTTCTCCTCCAAAGGTGAACATGAACAAGATCCCCTCGGGATTGAACCACTTAGTGAAAGAGGGCATGCCCTTGAATTCCAGTGTAGCAGAATTCTCAGCTGATCCTGGCTTTGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGAAGTAGGAGTTTCAATGGGAGGACCACCCAATTGGGGCTCAACACTAATGCTGAATTGGCTCAGAGATCTTCTCCATTGGTTGAAAATGGGAAGCTCCCTAGAGTCTCAAGTAGTCCATCATTGAAAGTGCCTGGATCAAACAAGAATTCTCCATTGCAAGACCTAATGGAAGTTGCCAATTCCCAAGAGGAATCCACAATCTCTGAACAAACTCCAAATGGGGACACTGGGGTGAAACCTTCCCCTTATATCAACTCTAGGAAAAGAAAAGGTCCATCCAAAGGAAAAGCCAAGGAAACTTCAACCTCCACCAACCCTCCTACGGCTGCTGAAGCTAGTGAAGACTCAAATGCAAAGCGCAGCAAGCCTAATGAACGCGAGGGAAATGAGAATGGCCAAGTGAAGGCAGAGGAAGAATCCAAACGGGGTGCTAGTAATGCTAATGATGAGAAACAGAACAAGAGTAACGCAAAACCTCCGGAGCCTCCAAAGGATTACATTCATGTTAGAGCAAGAAGAGGACAAGCCACGGATAGTCATAGTCTAGCAGAAAGAGTTCGGAGGGAGAAAATCAGTGAAAGAATGAAGCTTCTCCAAGATCTTGTCCCAGGTTGCAACAAGGTCACTGGCAAAGCACTTATGCTTGATGAAATTATAAACTATGTTCAGTCATTGCAGCGCCAAGTTGAGTTTCTGTCTATGAAGTTGGCTTCTGTTAACACCAGGCTGGATTTTAGTATTGAGAGTCTAATCTCAAAAGATATATTTCAATCAAATAATTCTTTGGCACACCCAATATTCCCAATAGATTCCTCAGCACCAGCCTTTTATGGGCAACACCCTCAGCCAAACCCAGCAATCCACAATAACATTCCTAATGGAACTGTGACCCACACTTCAGTGGACCCATTAGATACTGGTTTGTGCCAAAACCTTGGCATGCAGTTACCACACCTAAGTGGGTTTAATGAAGGTAGCTCTCAGTATCCAATAACATTCTCTGAAGATGACCTCCACACCATTGTTCAGATGGGATTTGGCCAAACTGCAAATAGGAAAACACCATTACAATCTCAGAGTTTCAACGGCTCAAATCAAGTACCCCTATGA 1680 0.4411 MENQFFLNAGVPPQLHFEPSAPPPCPPSWQSLSSAMDVQVTVLNCSTEQTQDCFYTPTWDKSTDHGLQFDSALSSMVSSPAASNSNMSSENFVIRELIGKLGNIGGGGGDEISPHSQPLVSASPYINGNNSTNTSCYSTPLSSPPKVNMNKIPSGLNHLVKEGMPLNSSVAEFSADPGFAERAAKFSCFGSRSFNGRTTQLGLNTNAELAQRSSPLVENGKLPRVSSSPSLKVPGSNKNSPLQDLMEVANSQEESTISEQTPNGDTGVKPSPYINSRKRKGPSKGKAKETSTSTNPPTAAEASEDSNAKRSKPNEREGNENGQVKAEEESKRGASNANDEKQNKSNAKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRLDFSIESLISKDIFQSNNSLAHPIFPIDSSAPAFYGQHPQPNPAIHNNIPNGTVTHTSVDPLDTGLCQNLGMQLPHLSGFNEGSSQYPITFSEDDLHTIVQMGFGQTANRKTPLQSQSFNGSNQVPL 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01231 559 MobiDBLite consensus disorder prediction 220 270 - -
Cca07g01231 559 Pfam Helix-loop-helix DNA-binding domain 369 416 IPR011598 GO:0046983
Cca07g01231 559 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 363 434 IPR036638 GO:0046983
Cca07g01231 559 MobiDBLite consensus disorder prediction 287 304 - -
Cca07g01231 559 MobiDBLite consensus disorder prediction 212 355 - -
Cca07g01231 559 MobiDBLite consensus disorder prediction 305 355 - -
Cca07g01231 559 Gene3D - 362 437 IPR036638 GO:0046983
Cca07g01231 559 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 365 415 IPR011598 GO:0046983
Cca07g01231 559 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 556 IPR024097 GO:0006355
Cca07g01231 559 SMART finulus 371 421 IPR011598 GO:0046983
Cca07g01231 559 CDD bHLH_AtBPE_like 355 440 - -
Cca07g01231 559 PANTHER BHLH TRANSCRIPTION FACTOR 2 556 - -
Cca07g01231 559 Coils Coil 412 432 - -
Cca07g01231 559 MobiDBLite consensus disorder prediction 540 559 - -
Cca07g01231 559 Coils Coil 324 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01231 Cca-Chr7 31306665 31309040 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01231 1 525 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 44.486 9.92e-112 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca07g01231 HLH 4.4e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01231 - - gmx:100787699 929.858