Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01226 ATGGAAGAAGATTTCGATATTCCCGACGGCGGCGAAGAAATGGATCTCGGCGAGGACAAGGTCGGCGAGGAGAGGGAGATCGGTTCCCGCGGCCTCCGGAAGAAGCTCGTCAAGGAAGGTCAAAGCTGGGAAACCCCCGAAGTCGGCGACGAAGTTCAAGTTCATTACACGGGGACGTTGCTGGATGGGACTAAGTTCGATTCGAGCCGCGATAGGGATTCTCCCTTTAGCTTCACTCTCGGACAAGGGCAAGTAATTAAAGGATGGGATGAAGGTATTAAAACCATGAAGAAAGGTGAAAATGCTATTTTCACCATCCCTCCTGAGCTAGCTTATGGTGAATCTGGTTCCCCTCCAACAATTCCTCCTAATGCTACACTCCAATTTGATGTTGAGCTGCTTTCGTGGACTAGTGTAAAGGACATATGCAAGGATGGTGGTATATTTAAAAAGATACTTACCGAGGGGGACAAATGGGAGAATCCAAAGGACCCTGATGAAGTTTTGGTTAAGTATGAAGTTTGTCTGGAAGATGGAAAGCTTGTAGCAAAGTCTGATGGAGTGGAGTTCACTGTCAGAGAGGGTCATTATTGTCCTGCATTATCAAAGGCTGTAAAAACCATGAAGAAGGGAGAGAAAGTGATTTTGACAGTTAAGCCACAGTATGGATTTGGTGAGAAAGGGAGGCCAGCACAAGGTGATGAAGGTGCAGTTCCACCAAATGCAACATTGCAGATTACTCTTGAATTAGTTTCATGGAAAACCGTTTCAGAAGTAACTGATGACAAGAAGGTCATCAAAAAGATCCTGAAGGAAGGGGAAGGATATGAGCGTCCAAATGAGGGGGCCATTGTGAAAGTGAAACTAATTGGTAAGCTACAGGACGGCACTGCCTTTTTGGAAAAGGGCCATGACAAAGAAGAGAAGCTGTTTGAATTCAAAACAGATGAGGAACAAGTGGTTGATGGACTTGATAGAGCTGTACTAACTATGAAGAAGGGTGAGGTTGCATTGTTGACCATTGCACCTGAGTATGCTTTCGGTTCATCAGAGTCCCAGCAGGAGTTGGCTGTGATTCCTCCTAACTCAACTGTGTATTTTGAAGTTGAGCTAGTGTCATTTGAGAAAGAGAAGGAGTCATGGGATCTGAACACTCAAGAGAAACTTGAGGCTGCTGGTAAGAAGAAAGAAGAAGGAAATGTGTTGTTTAAAGCTGGTAAATATGCAAGAGCCTCCAAAAGATATGAAAAGGCTGTGAAGTACATAGAATATGATTCCTCCTTTAGTGAGGAGGAGAAAAAGCAGGCCAAGACCTTGAAGGTTGCCTGCAATCTGAACAATGCCGCATGCAAGTTGAAGTTAAAAGACTATAAAGAAGCAGAGAAATTGTGCACTAAGGTGTTGGAACTTGAGACTTCAAATGTTAAAGCCCTCTATAGAAGGACCCAAGCATATATGCAATTGGGTGACTTGGATTTGGCTGAATTTGACATTAAGAAAGCTCTTGAGATTGACCCTAACAACAGGGAGGTCAAATTGGAGTACAGGACTTTGAAGGAAAAGGTGAAAGAGAATAATAAAAAGGAGGCAAAATTTTATGGAAATATGATCAACAAGTTGACCAAGATTGGTTCCTAA 1638 0.4341 MEEDFDIPDGGEEMDLGEDKVGEEREIGSRGLRKKLVKEGQSWETPEVGDEVQVHYTGTLLDGTKFDSSRDRDSPFSFTLGQGQVIKGWDEGIKTMKKGENAIFTIPPELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGIFKKILTEGDKWENPKDPDEVLVKYEVCLEDGKLVAKSDGVEFTVREGHYCPALSKAVKTMKKGEKVILTVKPQYGFGEKGRPAQGDEGAVPPNATLQITLELVSWKTVSEVTDDKKVIKKILKEGEGYERPNEGAIVKVKLIGKLQDGTAFLEKGHDKEEKLFEFKTDEEQVVDGLDRAVLTMKKGEVALLTIAPEYAFGSSESQQELAVIPPNSTVYFEVELVSFEKEKESWDLNTQEKLEAAGKKKEEGNVLFKAGKYARASKRYEKAVKYIEYDSSFSEEEKKQAKTLKVACNLNNAACKLKLKDYKEAEKLCTKVLELETSNVKALYRRTQAYMQLGDLDLAEFDIKKALEIDPNNREVKLEYRTLKEKVKENNKKEAKFYGNMINKLTKIGS 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01226 545 Gene3D Tetratricopeptide repeat domain 378 535 IPR011990 GO:0005515
Cca07g01226 545 Coils Coil 508 528 - -
Cca07g01226 545 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 165 254 IPR001179 GO:0003755
Cca07g01226 545 Gene3D - 25 140 IPR046357 GO:0003755
Cca07g01226 545 Gene3D - 255 376 IPR046357 GO:0003755
Cca07g01226 545 MobiDBLite consensus disorder prediction 1 33 - -
Cca07g01226 545 Gene3D - 141 254 IPR046357 GO:0003755
Cca07g01226 545 ProSiteProfiles TPR repeat profile. 475 508 IPR019734 GO:0005515
Cca07g01226 545 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 282 375 IPR001179 GO:0003755
Cca07g01226 545 PANTHER PEPTIDYLPROLYL ISOMERASE 1 260 - -
Cca07g01226 545 PANTHER PEPTIDYLPROLYL ISOMERASE 374 545 - -
Cca07g01226 545 PANTHER PEPTIDYLPROLYL ISOMERASE 263 374 - -
Cca07g01226 545 SMART tpr_5 392 425 IPR019734 GO:0005515
Cca07g01226 545 SMART tpr_5 441 474 IPR019734 GO:0005515
Cca07g01226 545 SMART tpr_5 475 508 IPR019734 GO:0005515
Cca07g01226 545 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 160 251 IPR001179 GO:0003755
Cca07g01226 545 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 276 372 IPR001179 GO:0003755
Cca07g01226 545 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 44 134 IPR001179 GO:0003755
Cca07g01226 545 SUPERFAMILY FKBP-like 141 257 - -
Cca07g01226 545 SUPERFAMILY FKBP-like 259 392 - -
Cca07g01226 545 SUPERFAMILY TPR-like 381 538 IPR011990 GO:0005515
Cca07g01226 545 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 49 137 IPR001179 GO:0003755
Cca07g01226 545 MobiDBLite consensus disorder prediction 14 33 - -
Cca07g01226 545 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 260 - -
Cca07g01226 545 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 374 545 - -
Cca07g01226 545 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 263 374 - -
Cca07g01226 545 Pfam Tetratricopeptide repeat 476 508 IPR001440 GO:0005515
Cca07g01226 545 SUPERFAMILY FKBP-like 23 148 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01226 Cca-Chr7 31212239 31217398 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01226 20 543 Calmodulin-binding Proteins AT3G25230 81.679 0.0 873
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01226 K09571 - gmx:100812632 1014.22