Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01223 ATGTTCTCTTTTTCCTCACTCCTTTCTCTCATGCACCCTGTCGCTGATATTCTCCTCAAACCCATTTTTCTTAGTGCCTTATCAGCCTCCATCCACCTTCTGTTACTGTTGGTGCTTTTGCTGTCATGGGTTTGGAGCAAAGTCACACTTGCGGCAGAACCGAGGGGAGAAGAGTCTGGTGAGAAGGAGAGACCAAGTAACAGCAAAACGACTGTCTTTGGTTCTGTGGCTCTTTCTGGCTTTAGTCTCATTCTCTGTTTGTTAAATTTCTTCTACTGGTACACGAGTGGCTGGTCAGAACCAGAAAGTGTATTGATTGTGACCCTTTTCGATTTAGCGCTCAAAACGCTTGCTTGGGGCGTTGTTTCTGTTTCCCTGCACAAGGGGTGCTTAAAGTTCTCGTTTTTCTTCAGAGGTTGGTGCGTTTTGTACTTGTTTGTTTCTTGCTATTCCTTCGTGGTGGACATTGTTGTTGTTCGTGGAAGGCCAGGTCAGTACTTGGTTGATGATGTTGTGTCCACTTGTGCCGGGTTGTTCTTCTGTTACGTGGGGTACTTTCTGATGAACAAGGGTCACGTTCAGGTTCAGGAGAATGATGATAGTAACGGTATTCGGGAACCTCTTTTGAATGGTGATGCAAAAGAGACCAAGGGTGGGGACTCTGTTACCCCTTTCTCTAATGCTGGAATTTTCAGTATTCTCACTTTCTCTTGGATGGGTTCTCTTATTGCTGTTGGCAATAAGAAGCCCTTGGACCTTGAGGATGTTCCTCAACTAGACCCAGGAGATAGTGTAGTTGGTGCTTTTCCAAGTTTCAGGGAAAAACTTGAGGCTTATTGTGGTGGTGCAAATGCAATCAATAGTGTCACCACATTTAAGTTGGTGAAGGCGTTAGTGTGGTCAGCGTGGAAGGGGATTCTCTTCACAGCTTTTCTTGCATTTTTGAACACCTTGGCTTCTTATGTTGGTCCTTATCTCATTGATGCTTTTGTTCAATACCTTGATGGAAGACGCCAGTATGAAAACCAGGGCTATGTTTTGGTTTCTGCCTTTTTCTTTGCAAAGCTTGTAGAGTGTCTCACCCAAAGGCATTGGTTCTTTAGGTTGCAGCAAATTGGAATTCGGATTAATGGGCTGCTTGTCTCGTTGATCTTTAATAAGGCTCTCACCCTTTCTTGTCAATCAAAGCAGGTCCACACTTCTGGGGAGATAATCAATTTCATGACTGTTGATGCTAAAAGAGTCGGTGCCTTCTGTTGGTACATGCATGATTTGTGGATGGTGGTTCTGCAAGTTACGTTGGCCTTGTTGATTCTGTATAAAAACCTTGGCCTTGCTTCAATTGCTGCTCTTGTCACAACTGTTGTTGTTATGTTGGCAAATGCTCCTTTGGGATCATTGGGGGAGAAGTATCAAAATAAGTTAATGGAGTCGAAGGATACACGAATGAAGGCCACTTCTGAGATTTTAAGAAATATGAGGATCCTTAAACTACAAGGATGGGAGATGAAGTTTCTATCCAAAATAACTGAGCTCAGGAAAACGGAGCAAGGCTGGTTAAAAAAATATGTTTATACAGCAGCCATAACCACATTTGTGTTTTGGGGTGCGCCCACACTTGTTTCTGTGGTTACTTTCGGTACTTGTATGCTTTTAGGGATCCCCCTTGAATCAGGGAGGATCTTGTCTGCCCTTGCAACGTTCCGGATTCTTCAAGAGCCCATTTATAATCTTCCTGATACAATTTCAATGATAATACAGACTAAGGTTTCTCTGGATAGGATTGTGTCATTCCTTCGTCTTGATGATTTGCAGCCTGATGTTGTAGAGAAGCTTCCTTGGGGTAGTTCTGATACAGCAATTGAAGTAGTTGATGGAAACTTTTCTTGGGATTTGTCTTCCCCTAACCCAACATTGCAAAATATAAATGTCAAAGTTTTACATGGAATGAGGGTTGCTGTTTGTGGTACTGTTGGATCGGGCAAGTCTACTTTACTTTCTTGTGTATTGGGAGAAGTACCAAAGATATCAGGCACTCTTAAGGTTTGTGGAACAAAGGCTTATGTTGCTCAATCTCCATGGATACCGAGCGGAAAGATAGAGGATAATATATTGTTTGGTACACACATGGATAGAGAAAGGTACGAGAAGGTACTTGAAGCTTGTTCCTTGAAGAAGGATTTGGAGATTTTGTCATTTGGTGATCAAACAGTTATAGGAGAACGTGGAATAAATTTGAGTGGTGGACAGAAACAAAGAATACAAATTGCACGTGCTCTTTACCAAGATGCTGATATATATCTATTTGATGATCCTTTTAGTGCTGTGGATGCTCACACTGGCTCTCACCTCTTTAAGGAATGTCTGTTGGGCCTTTTAAGTTCAAAGACAGTGGTTTATGTCACTCATCAAGTGGAGTTCTTACCTGCTGCTGACCTTATATTGGTCATGAAAGATGGAAAAATTACTCAATGTGGAAAGTATAAAGATCTTCTTAATAGTGGTACTGATTTCATGGAACTCGTTGGTGCACACAAAAAAGCTTTGTCTACACTAGATTCGTTGGATGGAGTGACAACATCTAATGAAATAAATACCTTGGAACATGGTGTAAAGGTCTCGGACACCCAGGGTTTTAAAGAAAAGGCAAGCAAAGATGAGCAAAGTGGTAAAATAGACGAAAAAAGTGAACAAAAAGGCCAGCTTATTCAAGAAGAAGAAAGAGAGAAAGGTAGAGTTGGCCTTTCAGTCTATTGGAACTATATCACAACAGCATATGGAGGAGCTTTGATACCATTCATATTGTTAGCTCAGATTCTTTTTCAAGCTCTTCAAATTGGAAGCAATTATTGGATGGCTTGGGCGACCCCCATCTCAGAAGATGTGGAGCCACCTATTGAAGGAACGACTCTTATAGTAGTCTATGTTGGTTTGGCCATTGGAAGCGCTTTCTGCGTCCTTGTTAGAGCAATACTTCTTGTCACAGTTGGTTATAAGACAGCTACTATACTCTTCAATAAAATGCACTTCTGCATTTTCCGTGCTCCAATGTCGTTTTTTGATTCCACTCCAAGTGGGCGAGTCCTTAACAGAGCTTCAACTGACCAAAGTGCTGTGGATACAGACATTCCTTATCAAATTGGGTCATTTGCTTTCTCTTTGATCCAGCTTTTTGGAATTATAGCAGTGATGTCTCAAGCTGCATGGCAGGTTTTCATTGTCTTTATACCTGTGATAGCAGTCAGCATCTGGTATCAGCAATATTATATACCATCAGCCCGAGAACTATCACGTTTAGTTGGGGTCTGCAAAGCCCCAACCATTCAACACTTCGCTGAAACAATTTCTGGCACTTCAACTATTAGAAGCTTTGATCAGCAGTCAAGATTTCGGGAAACAAATATGAAACTGAGTGATGGGTATTCTCGGCCAGTGTTCAATATTTCTGGTGCCATGGAATGGTTGTGCTTCCGCTTAGATATGTTGTCCGCTTTTACATTTGCCTTTTCATTAATTTTCTTAATATCTATTCCACCGGGATTCATAGATCCAGGCCTTGCTGGTTTAAGTGTTACATATGGACTTAATTTGAACATGATACAATCTTGGGTGATATGGAATCTCTGTAACATGGAAAACAAAATTATATCAGTAGAAAGAATACTTCAATATACTCGTATTCCTAGTGAGCCTCCTCTTTCTTTAGAAGAAAATCAGCCAGATCCTTCTTGGCCCTCACATGGAGAGGTTGATATTCAAGATTTGCAGGTTCGCTATGCTCCACACCTTCCACTTGTGTTGCGTGGTCTTACATGCAAATTTCGTGGAGGACTGAAAACTGGCATTGTTGGGAGAACAGGAAGTGGTAAATCTACTCTCATTCAAACACTTTTCCGAATTGTTGAGCCTAGTTCAGGGCAAGTTATGATTGACAACATCAACATCTCTTCAATTGGACTTCATGATTTGAGGTCTAGACTAAGCATTATTCCTCAAGATCCAACAATGTTTGAAGGGACAGTGAGAAGTAATCTGGACCCCCTAGAAGAATACACTGATGAACAAATTTGGGAGGCTCTGGATAAGTGTCAACTTGGAGATGAAGTTAGAAAGAAAGAAGGAAAGCTTGACTCCGCAGTTAGTGAGAATGGTGAGAATTGGAGTATGGGTCAAAGGCAGTTGGTTTGCCTTGGTAGGGTACTGCTGAAGAAAAGCAAGGTTTTGATACTTGATGAAGCCACTGCATCGGTTGATACAGCTACAGATAATTTAATCCAGCAAACTCTTAGGCAACATTTTTCTGACTCCACAGTCATTACTATTGCACATCGAATAACTTCTGTTCTTGACAGTGATATGGTTCTGCTTCTTAGTCAAGGAGTTATTGAGGAGTATGACACCCCATCAAATTTGCTAGAGAATAAGTCATCTTCTTTTGCTCAACTTGTTGCAGAGTATACCATGAGGTCCAATTCCAGTTTTGAGAAATCTGTTGATCACTGA 4503 0.4133 MFSFSSLLSLMHPVADILLKPIFLSALSASIHLLLLLVLLLSWVWSKVTLAAEPRGEESGEKERPSNSKTTVFGSVALSGFSLILCLLNFFYWYTSGWSEPESVLIVTLFDLALKTLAWGVVSVSLHKGCLKFSFFFRGWCVLYLFVSCYSFVVDIVVVRGRPGQYLVDDVVSTCAGLFFCYVGYFLMNKGHVQVQENDDSNGIREPLLNGDAKETKGGDSVTPFSNAGIFSILTFSWMGSLIAVGNKKPLDLEDVPQLDPGDSVVGAFPSFREKLEAYCGGANAINSVTTFKLVKALVWSAWKGILFTAFLAFLNTLASYVGPYLIDAFVQYLDGRRQYENQGYVLVSAFFFAKLVECLTQRHWFFRLQQIGIRINGLLVSLIFNKALTLSCQSKQVHTSGEIINFMTVDAKRVGAFCWYMHDLWMVVLQVTLALLILYKNLGLASIAALVTTVVVMLANAPLGSLGEKYQNKLMESKDTRMKATSEILRNMRILKLQGWEMKFLSKITELRKTEQGWLKKYVYTAAITTFVFWGAPTLVSVVTFGTCMLLGIPLESGRILSALATFRILQEPIYNLPDTISMIIQTKVSLDRIVSFLRLDDLQPDVVEKLPWGSSDTAIEVVDGNFSWDLSSPNPTLQNINVKVLHGMRVAVCGTVGSGKSTLLSCVLGEVPKISGTLKVCGTKAYVAQSPWIPSGKIEDNILFGTHMDRERYEKVLEACSLKKDLEILSFGDQTVIGERGINLSGGQKQRIQIARALYQDADIYLFDDPFSAVDAHTGSHLFKECLLGLLSSKTVVYVTHQVEFLPAADLILVMKDGKITQCGKYKDLLNSGTDFMELVGAHKKALSTLDSLDGVTTSNEINTLEHGVKVSDTQGFKEKASKDEQSGKIDEKSEQKGQLIQEEEREKGRVGLSVYWNYITTAYGGALIPFILLAQILFQALQIGSNYWMAWATPISEDVEPPIEGTTLIVVYVGLAIGSAFCVLVRAILLVTVGYKTATILFNKMHFCIFRAPMSFFDSTPSGRVLNRASTDQSAVDTDIPYQIGSFAFSLIQLFGIIAVMSQAAWQVFIVFIPVIAVSIWYQQYYIPSARELSRLVGVCKAPTIQHFAETISGTSTIRSFDQQSRFRETNMKLSDGYSRPVFNISGAMEWLCFRLDMLSAFTFAFSLIFLISIPPGFIDPGLAGLSVTYGLNLNMIQSWVIWNLCNMENKIISVERILQYTRIPSEPPLSLEENQPDPSWPSHGEVDIQDLQVRYAPHLPLVLRGLTCKFRGGLKTGIVGRTGSGKSTLIQTLFRIVEPSSGQVMIDNINISSIGLHDLRSRLSIIPQDPTMFEGTVRSNLDPLEEYTDEQIWEALDKCQLGDEVRKKEGKLDSAVSENGENWSMGQRQLVCLGRVLLKKSKVLILDEATASVDTATDNLIQQTLRQHFSDSTVITIAHRITSVLDSDMVLLLSQGVIEEYDTPSNLLENKSSSFAQLVAEYTMRSNSSFEKSVDH 1500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01223 1500 Pfam ABC transporter transmembrane region 934 1174 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g01223 1500 Pfam ABC transporter transmembrane region 307 574 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g01223 1500 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 933 1213 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g01223 1500 PANTHER MULTIDRUG RESISTANCE PROTEIN ABC TRANSPORTER FAMILY PROTEIN 109 1496 - -
Cca07g01223 1500 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 109 1496 - -
Cca07g01223 1500 ProSitePatterns ABC transporters family signature. 746 760 IPR017871 GO:0005524
Cca07g01223 1500 Gene3D - 1233 1486 IPR027417 -
Cca07g01223 1500 CDD ABC_6TM_ABCC_D1 308 595 IPR044746 GO:0140359
Cca07g01223 1500 Pfam ABC transporter 1268 1415 IPR003439 GO:0005524
Cca07g01223 1500 Pfam ABC transporter 639 773 IPR003439 GO:0005524
Cca07g01223 1500 Gene3D - 610 857 IPR027417 -
Cca07g01223 1500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 843 IPR027417 -
Cca07g01223 1500 SMART AAA_5 1276 1468 IPR003593 -
Cca07g01223 1500 SMART AAA_5 648 821 IPR003593 -
Cca07g01223 1500 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 621 844 IPR003439 GO:0005524
Cca07g01223 1500 Gene3D ABC transporter type 1, transmembrane domain 284 603 IPR036640 GO:0005524|GO:0016021
Cca07g01223 1500 Gene3D ABC transporter type 1, transmembrane domain 892 1231 IPR036640 GO:0005524|GO:0016021
Cca07g01223 1500 SUPERFAMILY ABC transporter transmembrane region 931 1232 IPR036640 GO:0005524|GO:0016021
Cca07g01223 1500 CDD ABC_6TM_ABCC_D2 931 1225 IPR044726 GO:0140359
Cca07g01223 1500 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 307 587 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g01223 1500 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1250 1484 IPR003439 GO:0005524
Cca07g01223 1500 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1241 1481 IPR027417 -
Cca07g01223 1500 SUPERFAMILY ABC transporter transmembrane region 297 606 IPR036640 GO:0005524|GO:0016021
Cca07g01223 1500 MobiDBLite consensus disorder prediction 878 904 - -
Cca07g01223 1500 CDD ABCC_MRP_domain1 621 821 - -
Cca07g01223 1500 CDD ABCC_MRP_domain2 1248 1468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01223 Cca-Chr7 31128881 31137406 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01223 621 851 Calmodulin-binding Proteins AT2G36910 29.084 1.61e-22 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01223 - K05666 gmx:100811245 2474.51