Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01197 ATGGCTGATCAACCACAAGGTGCTGTTGATGGAAATTCTGGAGTATCTCAACTTAAGGGCAAACGTGCCATGTTAGATTCATCATCACCTCCGTGTGGGGCTTGTAAGTACCAAAAGAAAAAGTGTCGCAATGATTGCATCTTTGCACCTTACTTTGGTTCTAACCAGGGTTATGCACAATTTGAAAAAGTGCATAAGGTATTTGGTACAAGCAATGTGTCAAAGATGTTGTTGGATGTGGAAGTGAATCATCGCCATGATGTGATCGGTAGCATATTGTTTGAGGCTCAAGCAAGGTTAGATGATCCTATTTATGGTTGTGTCTCCACCGTCATAGCTTTACAACAACAGCCACAATACTCCAACAACTCATCTGTTTCCACCAACTTCATGAACATGAGTAGCTTCAACTCTAGTTTTGATCAACTTGCAATGCAAACAACGCCCTTGACAAACAACTTAAAACCTCTTCAATTTCCTGAGCTACCTGAGAATGAGCAAGCTAGCATGATTCCCCAATTGTTGCTCATTCTTCTCTTTCGTCAAACTCGTGGCATTTTCCTTAGAACAAGAGTTGAGAAAAAGAGGTTTGATGGTTCACCTAGGTCCTCAAAAATTACTGCATTTTATGGCTTGAAGACACCTCCTTATGAACTTGACTTTATCTTTATTCAAAGTCTCTATGCTAGTGGGAGTGTATCATTTTACAATTTTGAAGCAATGGATAAGTCATGGATTATGAAGCTGCGAAACACAATTGAGTATGAGCAAGGAGTTAGGGGATTTATTGATTTTGCTTTTGAACACAGTTCAATAAATGACAAAATAATATGTCCTTGTAAACGATGTGGTTTCAAAAAAAGACAGATCAAGGATGTGGTGTATGATCATTTAATTTGTACACCATTTCCATGTGGGTATACAAGTTGGACTCATCATGGGGAAAGAAGGATAGGAGAAACTAGTAATAGTCCAAATGTAGATCAAGATGCCACTGATATTGAAGATCCTATTCAAAACATGATTAATGACGCTTTTGGAGTTGATAGGCCCCATGGAAATGAAGTACCCATTGTGTCAAATGTAGAGATTGATAGAGATGAAGAAATGATGCCAAATGCATCTGAAGAAAGGCGTGAAGCTAATGAGTTTTATGAATTAGCAAGAGATGGGGAGCAACCCTTGTACGAAGGGTGCACAAAGTATTCAAGATTGTCCTTTTTGGTGAAGTTATATCATATCAAATGCTTGTGTGGGATGAGCGATAAGGCCATGAAAATGATTTTAGAACTTCTGAAAGATGCCTTTGAACATGAAAACATTCCAAGTTCATTCTACGAGGCAAAGAAAATAATCAACAAGCTTGGTTTGAACTATGAAAAGATACAAGCATGTACGAATGATTGTATGCTTTACTGGGGTAACAGCGAAGATGAAGAGAGGGAGACATGCAAAGTTTGTAACACTTCAAGGTGGAAAGCAAGGGCAAAAATAAATAAGTTTAGGTTATCTGGTGATGACAATAGTATGAAGAAAGTGCCTGCAAAAGCAGCTGAATTAGAATCTCCAGCAGATTTGAGACGTTCTTCTGAGTCTAGCCATGTTCCTGAAGACAATGGAGGGTCATCATGA 1632 0.386 MADQPQGAVDGNSGVSQLKGKRAMLDSSSPPCGACKYQKKKCRNDCIFAPYFGSNQGYAQFEKVHKVFGTSNVSKMLLDVEVNHRHDVIGSILFEAQARLDDPIYGCVSTVIALQQQPQYSNNSSVSTNFMNMSSFNSSFDQLAMQTTPLTNNLKPLQFPELPENEQASMIPQLLLILLFRQTRGIFLRTRVEKKRFDGSPRSSKITAFYGLKTPPYELDFIFIQSLYASGSVSFYNFEAMDKSWIMKLRNTIEYEQGVRGFIDFAFEHSSINDKIICPCKRCGFKKRQIKDVVYDHLICTPFPCGYTSWTHHGERRIGETSNSPNVDQDATDIEDPIQNMINDAFGVDRPHGNEVPIVSNVEIDRDEEMMPNASEERREANEFYELARDGEQPLYEGCTKYSRLSFLVKLYHIKCLCGMSDKAMKMILELLKDAFEHENIPSSFYEAKKIINKLGLNYEKIQACTNDCMLYWGNSEDEERETCKVCNTSRWKARAKINKFRLSGDDNSMKKVPAKAAELESPADLRRSSESSHVPEDNGGSS 543
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01197 543 Pfam Transposase-associated domain 243 315 IPR029480 -
Cca07g01197 543 Pfam Lateral organ boundaries (LOB) domain 31 123 IPR004883 -
Cca07g01197 543 MobiDBLite consensus disorder prediction 1 27 - -
Cca07g01197 543 PANTHER UNCHARACTERIZED 241 495 - -
Cca07g01197 543 MobiDBLite consensus disorder prediction 505 543 - -
Cca07g01197 543 PANTHER - 241 495 - -
Cca07g01197 543 ProSiteProfiles LOB domain profile. 30 132 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01197 Cca-Chr7 30009810 30026642 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01197 1 157 AS2 family AT3G03760 37.719 6.01e-39 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca07g01197 LOB 4.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01197 - - ccaj:114915544 408.297