Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01195 ATGGAAGGCGTAATGGAGAACGGTGAGAATGATTTACCAGGACTGACTGATGTTGAGAAGCCAAGGATGAGAGGTCCTAAGAGAGCATCCAAAATTCGTAAATTGTTCAACCTGTCTAAGGAGGATGATGTGAGGAAGTATGTTAACACCTATCGTCGGACATTTACGACAAAAGCTGATTTTGCAAGTGTCATGTTACAAATCTTTGATGGTGGTACGGTTCCCATAGTTGTTTTGTTAAGTGAATGTTGGTGCATGTCTTTCAACATTGCGAACCCCACCACTGGGTGCCAGAAGAAGCTCGAGATCGATGACGATCAGAAATTACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTTAGTGGAGATGCACTTGGTGAGGAATTTAAAGGCTATCTTTTCAAAATCACTGGAGGTTGTGACAAGCAAGGATTCCCGATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTGTTGCTTCACAGGGGAACTCCTTGTTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAAAGTCTGTTCGTGGGGGCATTGTCAGCCCCGGTCGAGGAAACAATGTAACATCTTTTCAACTTTTAAGAGATTTTACTATAAGTTCAAAAAATAAAGAGTTTTCTGATCACTCTCAGCGAGAGTTCGACGCGGCGGTTGCAGAAGATCGCGAGATGAAGTTCAACATTGCGAACCCCACCACTGGGTGCCAGAAGAAGCTCGAGATCGATGACGATCAGAAATTACGAGCATTTTGGGACAAGAGGATCTCACAGGAGGTTAGTGGAGATGCACTTGGTGAGGAATTTAAAGGCTATCTTTTCAAAATCACTGGAGGTTGTGACAAGCAAGGATTCCCGATGAAGCAGGGAGTGCTGACCCCTGGTCGTGTTCGACTGTTGCTTCACAGGGGAACTCCTTGTTTCCGTGGATATGGAAGGCGTAATGGAGAACGTAGGAGAAAGTCTGTTCGTGGGTGCATTGTCAGCCCAGATCTCTCTGTTCTGAACCTTGTAATTGTGAAGAAGGGTGAGAATGATTTACCAGGACTGACTGATGTTGAGAAGCCAAGGATGAGAGGTCCTAAGAGAGCATCCAAAATTCGTAAATTGTTCAACCTGTCTAAGGAGGATGATGTGAGGAAGTATGTTAACACCTATCGTCGGACATTTACGACAAAAGCTGGGAAAAAGGTGAGTAAAGCTCCCAAGATTCAAAGACTGGTCACCCCTCTTACCCTCCAAAGAAAGAGGGCAAGAATTGCTGATAAGAAGAAGAGAATTGCCAAGGCAAAATCAGAGGCAGCAGAATACCAGAAACTCCTGGCCTCCAGGTTGAAGGAGCAGAGGGATCGCCGCAGTGAGAGTTTGGCTAAGAGGAGATCCAAGGTTTCCAGTGCTACCAAGGCCGTTGCGACTGAATAG 1446 0.462 MEGVMENGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKADFASVMLQIFDGGTVPIVVLLSECWCMSFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVSGDALGEEFKGYLFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGGIVSPGRGNNVTSFQLLRDFTISSKNKEFSDHSQREFDAAVAEDREMKFNIANPTTGCQKKLEIDDDQKLRAFWDKRISQEVSGDALGEEFKGYLFKITGGCDKQGFPMKQGVLTPGRVRLLLHRGTPCFRGYGRRNGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTDVEKPRMRGPKRASKIRKLFNLSKEDDVRKYVNTYRRTFTTKAGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKAKSEAAEYQKLLASRLKEQRDRRSESLAKRRSKVSSATKAVATE 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01195 481 Pfam Ribosomal protein S6e 86 191 IPR001377 GO:0003735|GO:0005840|GO:0006412
Cca07g01195 481 Pfam Ribosomal protein S6e 233 360 IPR001377 GO:0003735|GO:0005840|GO:0006412
Cca07g01195 481 ProSitePatterns Ribosomal protein S6e signature. 284 295 IPR018282 GO:0003735|GO:0005840|GO:0006412
Cca07g01195 481 ProSitePatterns Ribosomal protein S6e signature. 137 148 IPR018282 GO:0003735|GO:0005840|GO:0006412
Cca07g01195 481 PANTHER 40S RIBOSOMAL PROTEIN S6 5 60 - -
Cca07g01195 481 PANTHER 40S RIBOSOMAL PROTEIN S6 233 477 - -
Cca07g01195 481 Coils Coil 421 448 - -
Cca07g01195 481 MobiDBLite consensus disorder prediction 1 23 - -
Cca07g01195 481 SMART Ribosomal_S6e_2 86 199 IPR001377 GO:0003735|GO:0005840|GO:0006412
Cca07g01195 481 SMART Ribosomal_S6e_2 233 360 IPR001377 GO:0003735|GO:0005840|GO:0006412
Cca07g01195 481 PANTHER 40S RIBOSOMAL PROTEIN S6 86 192 - -
Cca07g01195 481 MobiDBLite consensus disorder prediction 451 469 - -
Cca07g01195 481 PANTHER 40S RIBOSOMAL PROTEIN S6 5 60 IPR001377 GO:0003735|GO:0005840|GO:0006412
Cca07g01195 481 PANTHER 40S RIBOSOMAL PROTEIN S6 233 477 IPR001377 GO:0003735|GO:0005840|GO:0006412
Cca07g01195 481 PANTHER 40S RIBOSOMAL PROTEIN S6 86 192 IPR001377 GO:0003735|GO:0005840|GO:0006412
Cca07g01195 481 Hamap 30S ribosomal protein S6e [rps6e]. 12 349 IPR020924 GO:0003735|GO:0005840|GO:0006412
Cca07g01195 481 Gene3D - 365 466 - -
Cca07g01195 481 MobiDBLite consensus disorder prediction 451 481 - -
Cca07g01195 481 Gene3D - 22 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01195 Cca-Chr7 29955511 29965972 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01195 233 480 Cytoplasmic Ribosomal Protein Gene Family AT5G10360 72.289 1.06e-115 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01195 K02991 - gmx:100804076 438.728