Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01183 ATGGATTTTGTGATAGTGGATTCGGACAAGGGAAATGAAGCAGAACATAGCTGTCTAGAAGAGAGTACAAGTATATTTGAAGGAGTTGACGTTCAAGAGCCATATGTGGGCTTGGAATTTGATTCTGAAGAAGATGCTAGGAAATTTTATGTTGAATATGCTAGACGGGTAGGATTTGTTGTACGCATAATGCAACGACGACGTTCTGGAATAGATGGGAGGACTCTTGCTCGCCGGCTTGGATGTAACAAACAAGGATTCTCACCAAATAACAAGGGAACATTGGGACCAGAGAAAAAGCCAAGACCTAGTGCGCGAGAAGGTTGCAAGGCAACAATTTTGGTGAAGTTGGAAAAATCAGGAAAATGGGTTGTCTCAAGATTTATAAAGGATCACAACCATCCCCTAATTGCCACAGCTAATGGGTTCAGCACAGCGGGTGATAAAGATAAGAAAATTGCAGAACTTACTATGGAGTTAGAGCGCCAAGATCAACTGTGTGCTGCATATCGAGAAAAACTGCTCAGCTTCATAAGCAATGTTGAGGAGGAAACAGTGGAACTGTCCACAAAAATTCAACTCATTATTGAAAATATAAGGACAGCTGAGTCAGAAATGAAAAAATGTTCCCAGAACAGAAAGCCTTGGTGCTTAACCCGAGTGTATAAATGA 672 0.4122 MDFVIVDSDKGNEAEHSCLEESTSIFEGVDVQEPYVGLEFDSEEDARKFYVEYARRVGFVVRIMQRRRSGIDGRTLARRLGCNKQGFSPNNKGTLGPEKKPRPSAREGCKATILVKLEKSGKWVVSRFIKDHNHPLIATANGFSTAGDKDKKIAELTMELERQDQLCAAYREKLLSFISNVEEETVELSTKIQLIIENIRTAESEMKKCSQNRKPWCLTRVYK 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01183 223 Coils Coil 192 212 - -
Cca07g01183 223 MobiDBLite consensus disorder prediction 83 106 - -
Cca07g01183 223 Pfam FAR1 DNA-binding domain 48 137 IPR004330 -
Cca07g01183 223 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 4 212 - -
Cca07g01183 223 Coils Coil 153 173 - -
Cca07g01183 223 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 4 212 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01183 Cca-Chr7 29327573 29334050 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Cca07g01183 FAR1 5.3e-29 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01183 - - vun:114183030 397.897