Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01182 ATGGGTAGGGAAAGTGTAGCTATGGATAAGAAGAACAAGAAAATTGGGTCTACTGGGTACGGCTCAATTTTCATGCATGCCGATCGCAAAGATTGGTTTTTTATGATTGTAGGTACCATTGGGGCTGTTGGTGAAGGCTTAACCACCCCTCTAGTGTTGCTTATCAGTAGCCGCATGATGAATAACATTGGGAGTTCCTCTAACATGGATGGACACACTTTCATCCATAACATCGACAGGAATGCGGTGGCGTGGTTATATTTGGCAGGTGCGTCTTTTGCCGTTTGCTTTCTCGAGGGTTATTGTTGGACAAGAACGAGTGAAAGACAAGCTGCGCGAATGAGACACAGGTATCTGAAAGCAGTGCTGAGACAAGATGTTGCGTACTTTGATTTGCATGTCACAAGCACGTCAGAGATCATCACCAGCGTCTCCAACGACAGCCTCGTAATTCAAGATGTTCTTAGTGAGAAGGTTCCGAATTTCTTGATGAACATATCCTTGTTCGTTGGAAGCTACATAGCGGCTTTTGCGATGTTGTGGAGGCTTGCCATAGTGGGGTTTCCGTTCGTGGTTCTTCTCGTGATCCCGGGTTTGATTTACGGGAAGACTCTGATGGGGTTGTCTTGCAAAATCAGAGACGAGTATAACGTCGCAGGAACAGTGGCGGAACAAGCGATTTCCTCCATAAGAACGGTGTATTCCTTTGTGGGGGAAAGCAAGACCTTGAGCGCTTTCTCCAACGCGCTTCAAGGCACGGTTAAGCTGGGCCTCAAACAAGGCCTGGCTAAGGGCTTGGCCATTGGAAGCAACGGCGTCGTTTTCGCCATCTGGTCCTTCATGTGCTACTACGGTAGCAGACTCGTCATTTATCATGGCGTCAAAGGAGGGACAGTTTTCGCGGTTGGCGCAGCACTCGCTGTTGGAGGACTGGGATTGGGAGTGGCATTATCGAACATGAAGTACTTTTCGGAAGCGGGTTCAGCAGCGGAGCGTATAAAAGAAGTGATAAAGAGGGTTCCCGACATAGATTCTGACAACAGGAATGGGGAAATTCTGGAGAGGGTTTACGGGGAAGTGGAATTCGAAGGGGTGGAGTTCGCGTACCCTTCGAGGCCAGATAGCAGTATTCTGAATGGGCTTAGCGTGAGGATCCCCGCAGGGAAGCGAGTGGCGCTGGTTGGGGAGAGTGGGTCAGGGAAATCAACGGTGATAGCGCTGTTGCAGAGGTTTTATGATCCAGTGGGGGGGGAGATACGGTTGGATGGGGTGGGGATTCAGAGGCTGCAGGTCAAGTGGCTGAGGGCGCAGATGGGGTTGGTGAGCCAGGAGCCTGCTCTGTTCGCGACCAGCATTAAAGAGAACATACTTTTTGGCAAAGAGGACGCGACCGATGATCAGGTGGTGGAGGCTGCAAAAGCTTCCCATGCTCATAATTTCATCTCGCTTCTGCCTCACGGTTATGATACACAGGTGGGGGAGAGAGGGATTCAGATGTCAGGGGGACAAAAACAGAGGATAGCAATAGCGAGGGCAATAATTAAGAAACCGCGAATCCTCCTTCTGGACGAAGCAACAAGCGCGCTGGACTCAGAGTCGGAGCGAATCGTCCAAGAAGCCCTCGACAACGTAGCCTCGGGCTGCACCGCCATCATCATCGCCCACCGTCTCTCCACCGTCCAAAACGCAGACCTCATCGCCGTCGTCCAACGCGGCAAGGTCGTCGAGATGGGCTCGCACAACGACCTCATGCAAAGCCCCGCCGGCGCCTACGCCTCCGCGTTTCGCCTCCAGCAGAAAACCGACAAGGCCGAAGAGGaacaacaacaacaacaacCCGTTACTCCCGGGAGTGTTGTCCCCTTCACCATGACACCACCAGCCACCGAAACCGCGGGCCCGGTGGGCCCAACGAGGCCCGGCGATCACGATGACGTGGCCGGAGGGAAAAATAAGGCGCGCGCGCCGTCGTTTCGGAGGCTTCTGGCGCTGAGCGCCCCCGAGTGGAAGCATGTCGTTTTGGGGTGCTTAAACGCCATGGTGTTCGGTGCCGTTCAGCCGGTTTACGCGTTCACGATGGGTTCCACGATACTCATGTACTTTAACACGGATCATGAGGAGATAGTGAGGAAGACTAGGTTCTACTCGTTTTGTTTTCTGGGTCTCTTTGCGGTTTCTTTTCTTTCGAATATTGGGCAGCATTATTGCTTCGGTTACATGGGGGAGTACTTGACCAAACGCGTCAGAGAGAACGTGCTTTCCAAAATCCTCACTTTCGAAGTTGGGTGGTTCGATTTGGACGAGAACTCCAGTGGTGCCGTCTGTTCTAGGCTTGCCAAAGATGCCAATGTGGTGAGGTCCCTAGTGGGAGATAGAATGGCCCTGCTAGTACAAACATTTTCAGCGGTTTTAACAGCCTACACCATGGGCCTCATCATTTCTTGGAGACTCTCCATTGTCATGATCGCCGTACAACCCGTCATCATCGCATGCTTCTACACAAGACGCGTCCTTCTCAAAAGCATGTCCGACAAGGCCGTCAAGGCCCAACAACAAAGCAGCAAGCTAGCCTCCGAGGCGGTTTCAAATCTCCGAACCGTCACAGCCTTTTCTTCGCAAGACCGGATTCTCAAAATGCTTGACCAGGCCCAACAAGGCCCAAGTCGGGAGAATGTTAGACAGTCATGGTTTGCCGGGCTTGGGCTTGGAGTCTCCCAGGGCATTGCTTCGTGTATCTGGGCCCTGGATTTTTGGTACGGTGGGAGGCTTATCTCCTCTGGGTATATCACAACGAAAACTTTCTTTGAGAGCTTCATGGTTTTGGTGAGCACGGGAAGGATCATTGCGGACGCGGGTAGCATGACCACGGATCTATCTAGAGGTGCTGACGTCGTGGGCTCGGTTTTCGGGATCATTGATCGGTGCACGAAAATTGAGCCCGATGATCCAAATGGAAACAAGGCAGAGAAGCTAGTTGGTGAAATTGAGCTTCATGATGTGCATTTTGCGTACCCAACTAGACCCGATGTGGGTATCTTCCAAGGGTTCTCGATTAAAATTGAAGCGGGGAAATCAACAGCGTTGGTGGGGCAAAGTGGGTCCGGGAAATCAACCATCATAGGGCTAATAGAGAGATTTTACGATCCACTTAAGGGGATTGTGACAATAGATGGGATGGACATAAAATCGTATAACCTAAAGTCACTAAGGAAGCACATAGCACTAGTGAGCCAAGAGCCAACGTTGTTTGGTGGGACCATAAGAGAGAACATTGCATATGGAGCAACATGCGAGAAGGTTGATGAGAGTGAGATCATGGAGGCAGCACGAGCAGCGAACGCTCACGATTTCATAGCTAGCCTGAAGGAGGGGTACGAAACGTGGTGTGGGGAAAAAGGGGTGCAACTTTCGGGTGGTCAAAAGCAGAGAATAGCAATAGCGAGAGCCATTTTGAAGAAGCCGAAGGTGTTGCTGTTGGACGAGGCCACAAGCGCATTAGATGGTAAATCTGAGAAGGTGGTGCAAGAGACTTTGATGAGGGTAATGATAGGGAGGACCAGCGTGGTGGTGGCGCATAGGTTGAGCACCATACAGAATTGTGATGTTATTGGTGTGTTGGAAAAGGGGAAGGTGGTGGAGATTGGAACCCACTCGTCCTTGTTGGCCAAAGGACCGTGTGGAGCTTATTACTCCTTGGTGAACCTTCAGACGAGACATGCAGCCACAATCAATAACACTACTTGTACTAAAGCTACCGATTGA 3762 0.5106 MGRESVAMDKKNKKIGSTGYGSIFMHADRKDWFFMIVGTIGAVGEGLTTPLVLLISSRMMNNIGSSSNMDGHTFIHNIDRNAVAWLYLAGASFAVCFLEGYCWTRTSERQAARMRHRYLKAVLRQDVAYFDLHVTSTSEIITSVSNDSLVIQDVLSEKVPNFLMNISLFVGSYIAAFAMLWRLAIVGFPFVVLLVIPGLIYGKTLMGLSCKIRDEYNVAGTVAEQAISSIRTVYSFVGESKTLSAFSNALQGTVKLGLKQGLAKGLAIGSNGVVFAIWSFMCYYGSRLVIYHGVKGGTVFAVGAALAVGGLGLGVALSNMKYFSEAGSAAERIKEVIKRVPDIDSDNRNGEILERVYGEVEFEGVEFAYPSRPDSSILNGLSVRIPAGKRVALVGESGSGKSTVIALLQRFYDPVGGEIRLDGVGIQRLQVKWLRAQMGLVSQEPALFATSIKENILFGKEDATDDQVVEAAKASHAHNFISLLPHGYDTQVGERGIQMSGGQKQRIAIARAIIKKPRILLLDEATSALDSESERIVQEALDNVASGCTAIIIAHRLSTVQNADLIAVVQRGKVVEMGSHNDLMQSPAGAYASAFRLQQKTDKAEEEQQQQQPVTPGSVVPFTMTPPATETAGPVGPTRPGDHDDVAGGKNKARAPSFRRLLALSAPEWKHVVLGCLNAMVFGAVQPVYAFTMGSTILMYFNTDHEEIVRKTRFYSFCFLGLFAVSFLSNIGQHYCFGYMGEYLTKRVRENVLSKILTFEVGWFDLDENSSGAVCSRLAKDANVVRSLVGDRMALLVQTFSAVLTAYTMGLIISWRLSIVMIAVQPVIIACFYTRRVLLKSMSDKAVKAQQQSSKLASEAVSNLRTVTAFSSQDRILKMLDQAQQGPSRENVRQSWFAGLGLGVSQGIASCIWALDFWYGGRLISSGYITTKTFFESFMVLVSTGRIIADAGSMTTDLSRGADVVGSVFGIIDRCTKIEPDDPNGNKAEKLVGEIELHDVHFAYPTRPDVGIFQGFSIKIEAGKSTALVGQSGSGKSTIIGLIERFYDPLKGIVTIDGMDIKSYNLKSLRKHIALVSQEPTLFGGTIRENIAYGATCEKVDESEIMEAARAANAHDFIASLKEGYETWCGEKGVQLSGGQKQRIAIARAILKKPKVLLLDEATSALDGKSEKVVQETLMRVMIGRTSVVVAHRLSTIQNCDVIGVLEKGKVVEIGTHSSLLAKGPCGAYYSLVNLQTRHAATINNTTCTKATD 1253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01182 1253 SMART AAA_5 387 581 IPR003593 -
Cca07g01182 1253 SMART AAA_5 1022 1218 IPR003593 -
Cca07g01182 1253 SUPERFAMILY ABC transporter transmembrane region 656 980 IPR036640 GO:0005524|GO:0016021
Cca07g01182 1253 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 36 325 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g01182 1253 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 360 596 IPR003439 GO:0005524
Cca07g01182 1253 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 995 1233 IPR003439 GO:0005524
Cca07g01182 1253 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 18 1242 IPR039421 -
Cca07g01182 1253 Gene3D - 985 1246 IPR027417 -
Cca07g01182 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 351 598 IPR027417 -
Cca07g01182 1253 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 988 1236 IPR027417 -
Cca07g01182 1253 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 18 1242 - -
Cca07g01182 1253 Pfam ABC transporter 1014 1164 IPR003439 GO:0005524
Cca07g01182 1253 Pfam ABC transporter 378 527 IPR003439 GO:0005524
Cca07g01182 1253 CDD ABC_MTABC3_MDL1_MDL2 995 1236 - -
Cca07g01182 1253 Gene3D - 358 611 IPR027417 -
Cca07g01182 1253 CDD ABC_6TM_Pgp_ABCB1_D2_like 662 978 - -
Cca07g01182 1253 Gene3D ABC transporter type 1, transmembrane domain 84 967 IPR036640 GO:0005524|GO:0016021
Cca07g01182 1253 MobiDBLite consensus disorder prediction 598 651 - -
Cca07g01182 1253 ProSitePatterns ABC transporters family signature. 499 513 IPR017871 GO:0005524
Cca07g01182 1253 Pfam ABC transporter transmembrane region 673 943 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g01182 1253 Pfam ABC transporter transmembrane region 35 302 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g01182 1253 SUPERFAMILY ABC transporter transmembrane region 24 342 IPR036640 GO:0005524|GO:0016021
Cca07g01182 1253 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 679 960 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g01182 1253 MobiDBLite consensus disorder prediction 608 625 - -
Cca07g01182 1253 CDD ABC_MTABC3_MDL1_MDL2 360 598 - -
Cca07g01182 1253 CDD ABC_6TM_Pgp_ABCB1_D1_like 35 333 - -
Cca07g01182 1253 ProSitePatterns ABC transporters family signature. 1136 1150 IPR017871 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01182 Cca-Chr7 29281931 29289858 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01182 31 601 Calmodulin-binding Proteins AT2G36910 37.197 1.00e-106 364