Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01180 ATGATCCCAAATAAGTATGTGGAGAAATATGGAGAAGACTTGTCAACAAGTTTTGTATTTCTTAAAACACCAAATGGTGCTGAGTGGAAATTGAATTTGGAAAAATGTTATGGTAAAATATGGTTTCAAAAGGGTTGGAAAAAATTTGCTGAGTATCACTCTCTAGCTCATGGCCATCTTTTGATTTTTAGATGCGAAAGAACTTCCCATTTTAAGGTACACATATTTGATCCGAGTGCCTTAGAGATAAAATATCCTTCCCAAACAATAGAACGTGAAACAGTTTCCAATAGTCGAGGAAATGAGTCTACAAATGTTGAGAATTTGGAGTATCACAGACCAGGTCCAAAGAGAAAAGACAACTCCTCATTGGAATTTCTTCAACAATATCAATTGACAAGTTATAATTGTGTTAAAGTTGAGAACAACGAGATATTACCTGAGGAGGCTCTTCATCGTACTGACACAAAGTGCAAAGAAAAATCAAAGGCTACTGCTAACCAAGTTTCCGCTCTTGATAGAGCAAATTCTTTCAAACCTTGTAATCCTTTCATCTTGGTTGTCATGCAGCCATCATATCTTGGTACTCAATATCGATTGCATTTACCATATACGTTTTGTCAGAGACACTTTGATTTGCACGTGAATCAGGGACTTATCAACCTTCAAGTGTTAGATGGGAGAGTTTGGCCTACAAAGTTCCTGATATATAAACACAAGACAACAACAAAAGTTAGACTATCATGGAGGGCATTTGTAAAGAACAATGGCTTGAAAGTTGGTGATGTTTGCACCTTTGAGCTTATTCATAGAACTAAACTAACCTTCCTGGTTCACATCTTTAGAGAGCCAGACAATTCAAATTGTTCAACATCTCAAGACACTCATGAGGAGAACACAGAGGTCGTAGGAGTGCATCTTGAAGATCCTCGTCTCTTATTAAATGCTTATTGA 954 0.3679 MIPNKYVEKYGEDLSTSFVFLKTPNGAEWKLNLEKCYGKIWFQKGWKKFAEYHSLAHGHLLIFRCERTSHFKVHIFDPSALEIKYPSQTIERETVSNSRGNESTNVENLEYHRPGPKRKDNSSLEFLQQYQLTSYNCVKVENNEILPEEALHRTDTKCKEKSKATANQVSALDRANSFKPCNPFILVVMQPSYLGTQYRLHLPYTFCQRHFDLHVNQGLINLQVLDGRVWPTKFLIYKHKTTTKVRLSWRAFVKNNGLKVGDVCTFELIHRTKLTFLVHIFREPDNSNCSTSQDTHEENTEVVGVHLEDPRLLLNAY 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01180 317 SUPERFAMILY DNA-binding pseudobarrel domain 180 284 IPR015300 -
Cca07g01180 317 Pfam B3 DNA binding domain 187 283 IPR003340 GO:0003677
Cca07g01180 317 Pfam B3 DNA binding domain 1 77 IPR003340 GO:0003677
Cca07g01180 317 Gene3D - 1 80 IPR015300 -
Cca07g01180 317 Gene3D - 164 285 IPR015300 -
Cca07g01180 317 SMART B3_2 1 79 IPR003340 GO:0003677
Cca07g01180 317 SMART B3_2 185 284 IPR003340 GO:0003677
Cca07g01180 317 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 1 283 - -
Cca07g01180 317 CDD B3_DNA 1 77 IPR003340 GO:0003677
Cca07g01180 317 ProSiteProfiles B3 DNA-binding domain profile. 185 284 IPR003340 GO:0003677
Cca07g01180 317 MobiDBLite consensus disorder prediction 91 120 - -
Cca07g01180 317 PANTHER B3 DOMAIN-CONTAINING 1 283 - -
Cca07g01180 317 SUPERFAMILY DNA-binding pseudobarrel domain 1 79 IPR015300 -
Cca07g01180 317 CDD B3_DNA 183 282 IPR003340 GO:0003677
Cca07g01180 317 MobiDBLite consensus disorder prediction 91 108 - -
Cca07g01180 317 ProSiteProfiles B3 DNA-binding domain profile. 1 79 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01180 Cca-Chr7 29061437 29066111 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01180 2 285 B3 DNA Binding Superfamily AT3G18990 29.538 5.64e-34 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca07g01180 B3 5.6e-20 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01180 - - ccaj:109788384 664.07