Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01176 ATGGCTACTCAGCCTCAAGTGAAGCCAATCCACTTTTTCAGGATCATAACCCTTCAAAATCTGCATCAAGGAAAGCTTATGTTCCCAGAAAAGTTTGTGGAGAAATATGGAGAAGGTTTATCAACAAATACTCTATTTCTTAGTACACCAAATGGTGCTGAGTGGAAATTGAATTTGGAAAAATGTGACGGTAAAATATGGTTTCAAAAGGGTTGGAAAGAATTTGCAGAGTATCACTCTCTAGCTCATGGCCATCTTTTGGTTTTTAGATGCCAAAGAACTTCCCATTTTCAGCTACGCATATTTGATTGGAGTGCCTTAGAGATAGAATATCCTTCCAAAAGAATAGAATGCGAGACAGGCTCCAATAATCAAGGAAATACATCTACAAATGTTGGAAAATTTGAGTATCACAGACCAGGCCAAAAGAGAAAAGACAACTCCTCATTGGAATTTGTTCAACGATATCAATTGAGAAGTCGTAATTGTCTTAAAGTTGAGAAGACTGAGATATTGCCTAAGGAGATCCTGCATCATACTGGCACAAAGTGCAAAGAAAAATCAAAGGCTACTGCTAACCAAGTTTCTGCTCTTGATAGAGCAAGTTCTTTCAAACCTTGTAATCCGTTCTTCTTGGTTGTCATGCATCCATATAATGTCGGTTCTCGATGTCTATTGACTTTACCACTTAAGTTTTGTAGGAGACACTTTGATTTGCACATGAAGCAGGGACTAATCAACCTTCAGGTGTTAAGTGGGAGATTTTGGCCTGCAAAGTTCCTGATCTATATACACGAGACAACAACAAAAGTTAGACTATCATGGAGGGCATTTGTGAAGAACAATAACTTGAAAGTTGGTGATGTTTGCACCTTTGAACTCATTGATAGAACTAAACTAACCTTCTTGGTTCGCATCTTTAGAGAGACAGGGAATTCAAATTGTTCAACATCTCAAGAATCTGGTCAAGTGAGAGCAGCTTGTCAATTACAGAAAAAAGAGATGAAAATCATCACTACTACCAAATAA 1029 0.3771 MATQPQVKPIHFFRIITLQNLHQGKLMFPEKFVEKYGEGLSTNTLFLSTPNGAEWKLNLEKCDGKIWFQKGWKEFAEYHSLAHGHLLVFRCQRTSHFQLRIFDWSALEIEYPSKRIECETGSNNQGNTSTNVGKFEYHRPGQKRKDNSSLEFVQRYQLRSRNCLKVEKTEILPKEILHHTGTKCKEKSKATANQVSALDRASSFKPCNPFFLVVMHPYNVGSRCLLTLPLKFCRRHFDLHMKQGLINLQVLSGRFWPAKFLIYIHETTTKVRLSWRAFVKNNNLKVGDVCTFELIDRTKLTFLVRIFRETGNSNCSTSQESGQVRAACQLQKKEMKIITTTK 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01176 342 Gene3D - 5 106 IPR015300 -
Cca07g01176 342 Pfam B3 DNA binding domain 211 309 IPR003340 GO:0003677
Cca07g01176 342 Pfam B3 DNA binding domain 16 101 IPR003340 GO:0003677
Cca07g01176 342 CDD B3_DNA 209 308 IPR003340 GO:0003677
Cca07g01176 342 SUPERFAMILY DNA-binding pseudobarrel domain 6 105 IPR015300 -
Cca07g01176 342 Gene3D - 190 311 IPR015300 -
Cca07g01176 342 SMART B3_2 12 105 IPR003340 GO:0003677
Cca07g01176 342 SMART B3_2 211 310 IPR003340 GO:0003677
Cca07g01176 342 MobiDBLite consensus disorder prediction 120 135 - -
Cca07g01176 342 CDD B3_DNA 11 103 IPR003340 GO:0003677
Cca07g01176 342 ProSiteProfiles B3 DNA-binding domain profile. 211 310 IPR003340 GO:0003677
Cca07g01176 342 ProSiteProfiles B3 DNA-binding domain profile. 11 105 IPR003340 GO:0003677
Cca07g01176 342 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 5 309 - -
Cca07g01176 342 PANTHER B3 DOMAIN-CONTAINING 5 309 - -
Cca07g01176 342 MobiDBLite consensus disorder prediction 120 143 - -
Cca07g01176 342 SUPERFAMILY DNA-binding pseudobarrel domain 206 309 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01176 Cca-Chr7 28969148 28971568 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01176 12 328 B3 DNA Binding Superfamily AT3G18990 27.654 5.46e-36 132
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca07g01176 B3 5.8e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01176 - - ccaj:109791706 701.434