Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01175 ATGGCTACCAAATCTCTTCACCAACCTCAGCCTCAGATGAAGCCAATCCACTTCTTCAAGATCATAACCCTTCAAAGTCTTCATAATGGAAAGCTAATGTTCCCGGAAAGGTTTGTGGAGAGATATGGAGAAGGCTTACCCAATAGTCTATTTCTTAAGACCCCAAATGGTGCTGAGTGGAGATTGAATTTGGAAAAACGGAATGGTAAAATATGGTTTGAAGAGGGTTGGAAAGAATTTGCAGAGCATCACTCTCTAGCTCATGGCCATCTTTTGGTTTTCAGATGCCAAAGAACTTCCCTTTTTCAGGTATTCATCCTTGATATGAGTGCCTTAGAGATAGACTACCCTTCAGAAAGAGTAGAAGGTGAGAAGGCCTCCAATAATCATGGAAATAGACCTCCAAATGACGAAAATTTGGAATATCATAGACCAGGTCAAAAGAGAAAATATAACTTAGCAGTGGATTTTCTTCCATTATATCATTTGAGAAGTAGCACGAGTATTAAAGTTGAGAACACTGTGATATTGTCGAAGGAGGCTCTGCATCATACTGACACAAAATGCAAAGAAAAATCAAAGGCTACTTCTAACCAAGTTACTGCTCTTGATAGAGCAAGTTCTTTCAAACCTTGTAATCCATTCTTCATGGTTGTCATGCGTCGATCATACCTCCATTGTAAGGGTTCTTATCTGGGTTTACCATGTGAGTTTTGTAGGAGCTACATTGATTTGCACGATCAGCAGAGACATATCAACCTTCAAGAGTTAAATGGGAGAGTTTGGCCTTCAAGGTATCTAATCACGAAAAACAATAGAAATACAAAACCAAGATATAGACTCAAAAGTGGATGGAAGGCATTCGTCAAGCACAATAATTTGAAAGTTGGTGATGTTTGCACCTTTGAGCTCATTTGTAGAACTAAACTAACCTTACTGGTTCACATCTTTAGAGAGACAGACAGTTCAAATTGTTCAACACCTCAAGAAAAATCAAAGGCTACTACTAACCAAGTTACAGCTCTTGATAGAGCAAATTCTTTCAAACCTTGTAATCCATTCTTCTTGGCTGTCATACATCCATCATACTTGGGTTCTTCTGCTGGTCATTTGAGTTTACCATCCGAGTTTTTTCGGATACACTTTGATTCGCACATGAAGCAGAGACTTATCAACCTTCAGGAATTAAATGGGAGAGTTTGGCCTGCAAAGTTTGTGATCCATAAAAGCAGGACGAAAACAAGATATAGATTCTTAGGTGGATGGAAGGCATTTGTGGAGCACAATAACTTGAAAGTTGGTGATGTTTGCAACTTTGAACTCATTCATAGAACTACACCAACTTTCTTGGTTCACATCTTTAGACAGAGTGACAATTCAAATTGTTCAACCTCTCAAGAATCTGGTCAAATGAGAGCAGCTTGTCAAGGGCAGATAGAAAAGATGAAAACCATCACTGCTAGCACATAA 1470 0.3878 MATKSLHQPQPQMKPIHFFKIITLQSLHNGKLMFPERFVERYGEGLPNSLFLKTPNGAEWRLNLEKRNGKIWFEEGWKEFAEHHSLAHGHLLVFRCQRTSLFQVFILDMSALEIDYPSERVEGEKASNNHGNRPPNDENLEYHRPGQKRKYNLAVDFLPLYHLRSSTSIKVENTVILSKEALHHTDTKCKEKSKATSNQVTALDRASSFKPCNPFFMVVMRRSYLHCKGSYLGLPCEFCRSYIDLHDQQRHINLQELNGRVWPSRYLITKNNRNTKPRYRLKSGWKAFVKHNNLKVGDVCTFELICRTKLTLLVHIFRETDSSNCSTPQEKSKATTNQVTALDRANSFKPCNPFFLAVIHPSYLGSSAGHLSLPSEFFRIHFDSHMKQRLINLQELNGRVWPAKFVIHKSRTKTRYRFLGGWKAFVEHNNLKVGDVCNFELIHRTTPTFLVHIFRQSDNSNCSTSQESGQMRAACQGQIEKMKTITAST 489
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01175 489 MobiDBLite consensus disorder prediction 122 144 - -
Cca07g01175 489 CDD B3_DNA 214 318 IPR003340 GO:0003677
Cca07g01175 489 SUPERFAMILY DNA-binding pseudobarrel domain 350 456 IPR015300 -
Cca07g01175 489 Gene3D - 334 459 IPR015300 -
Cca07g01175 489 Gene3D - 195 322 IPR015300 -
Cca07g01175 489 CDD B3_DNA 17 108 IPR003340 GO:0003677
Cca07g01175 489 ProSiteProfiles B3 DNA-binding domain profile. 356 457 IPR003340 GO:0003677
Cca07g01175 489 ProSiteProfiles B3 DNA-binding domain profile. 17 110 IPR003340 GO:0003677
Cca07g01175 489 CDD B3_DNA 353 455 IPR003340 GO:0003677
Cca07g01175 489 SUPERFAMILY DNA-binding pseudobarrel domain 211 320 IPR015300 -
Cca07g01175 489 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 330 456 - -
Cca07g01175 489 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 9 319 - -
Cca07g01175 489 SUPERFAMILY DNA-binding pseudobarrel domain 12 110 IPR015300 -
Cca07g01175 489 SMART B3_2 18 110 IPR003340 GO:0003677
Cca07g01175 489 SMART B3_2 355 457 IPR003340 GO:0003677
Cca07g01175 489 SMART B3_2 216 320 IPR003340 GO:0003677
Cca07g01175 489 PANTHER B3 DOMAIN-CONTAINING 9 319 - -
Cca07g01175 489 PANTHER B3 DOMAIN-CONTAINING 330 456 - -
Cca07g01175 489 Pfam B3 DNA binding domain 18 102 IPR003340 GO:0003677
Cca07g01175 489 Pfam B3 DNA binding domain 228 319 IPR003340 GO:0003677
Cca07g01175 489 Pfam B3 DNA binding domain 355 456 IPR003340 GO:0003677
Cca07g01175 489 Gene3D - 11 111 IPR015300 -
Cca07g01175 489 ProSiteProfiles B3 DNA-binding domain profile. 217 320 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01175 Cca-Chr7 28947417 28949612 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01175 318 479 B3 DNA Binding Superfamily AT3G18990 32.143 5.12e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca07g01175 B3 5.7e-18 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01175 - - ccaj:109791708 1017.68