Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01170 ATGACCTTTTTCAATATCATAATCGCTCATAGCCTTCAAGAAGGAAAGCTAATGATCCCAAATAAGTTTGTAGAGAAATGTGGACAAGGGTTACCAAATATTGTATTCCTTAAGCCTCCAAATGGTGTAGAATGGAAATTGAGTTTGGAAAAACGCGATGGCAAATTATGGTTTCAAAAGGGTTGGAAGGAATTTGCAGAGCATCACTCTCTAGCTCATGGCCATCTTTTGCTTTTTACATACCAAAGAACTTCCCATATGTTGGTCCACATCTTTGATAGCAGTGCCTTGGAGATAGACTATCCTCTCGAAAAAGTTGAAGGTAAAATGGCCTCCAATAATGGAAATAATAAACCTGTAAATGATGAGAATTTGGAATATCATAGATCAGGTCAAAAGAGAAAAGATAATTCCCGATTGGAATTCCTTCAATCACGGATTGAGAGTACCAAATGTGTTAAGGTTGATAACACAATGAAATTGCCAAAGGCTGCCCCACAACACACTGACATAAAGTGCAAAGGTAAGAGATTTTATCTGTATCTAACAAGAAAACTAATGACTACTAATAAGGAAGTTACGGCTTTTGATAGAGCAAATTGTTTCAGACCTTGTAATCCATCCTTCCTGGTTGTCATGAATCCATCATACGTTTTGTCTCGGGGTCCTTTGAATTTTCCAACTAAATTTTGTAAGAGATACATTGATTTGCGCAACAAGAGGGGAGACATAAATCTTGAGGTGTCAAATGGGAGAGTTTGCACTGTAAGGTACCTAGCACGGAAAGTCGCCAAAAGAACAAGACTCGAACTCTCTACTGGATGGAAGACATTTGCACTGGACAATAACTTGAAAATAGGTGATGTTTGCATCTTTGAGCTCATTCCTGGAACAAAACTCACTTTCCATGTCCACATCTTTAGAGTTTCAGACAATTCAAATTGTTCAACATCTCAAGTAGAATCACAACAAAAGATATAG 981 0.3761 MTFFNIIIAHSLQEGKLMIPNKFVEKCGQGLPNIVFLKPPNGVEWKLSLEKRDGKLWFQKGWKEFAEHHSLAHGHLLLFTYQRTSHMLVHIFDSSALEIDYPLEKVEGKMASNNGNNKPVNDENLEYHRSGQKRKDNSRLEFLQSRIESTKCVKVDNTMKLPKAAPQHTDIKCKGKRFYLYLTRKLMTTNKEVTAFDRANCFRPCNPSFLVVMNPSYVLSRGPLNFPTKFCKRYIDLRNKRGDINLEVSNGRVCTVRYLARKVAKRTRLELSTGWKTFALDNNLKIGDVCIFELIPGTKLTFHVHIFRVSDNSNCSTSQVESQQKI 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01170 326 ProSiteProfiles B3 DNA-binding domain profile. 2 95 IPR003340 GO:0003677
Cca07g01170 326 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 2 309 - -
Cca07g01170 326 Gene3D - 186 312 IPR015300 -
Cca07g01170 326 Pfam B3 DNA binding domain 9 94 IPR003340 GO:0003677
Cca07g01170 326 Pfam B3 DNA binding domain 209 309 IPR003340 GO:0003677
Cca07g01170 326 CDD B3_DNA 207 308 IPR003340 GO:0003677
Cca07g01170 326 PANTHER B3 DOMAIN-CONTAINING 2 309 - -
Cca07g01170 326 SUPERFAMILY DNA-binding pseudobarrel domain 3 95 IPR015300 -
Cca07g01170 326 CDD B3_DNA 10 93 IPR003340 GO:0003677
Cca07g01170 326 Gene3D - 1 96 IPR015300 -
Cca07g01170 326 SMART B3_2 3 95 IPR003340 GO:0003677
Cca07g01170 326 SMART B3_2 209 310 IPR003340 GO:0003677
Cca07g01170 326 SUPERFAMILY DNA-binding pseudobarrel domain 203 310 IPR015300 -
Cca07g01170 326 ProSiteProfiles B3 DNA-binding domain profile. 209 310 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01170 Cca-Chr7 28652564 28656873 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01170 3 311 B3 DNA Binding Superfamily AT3G18990 31.105 5.66e-40 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca07g01170 B3 8.3e-19 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01170 - - gmx:100819782 367.466