Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01153 ATGCAGTTCAATCGTCTCTGCATTGTTTTACCACCAAATTCAGGTGAAATAGTGGTGCCACTTGAAAAGGGTGACCAACTTGAATCCTTTCAAACACCAAAGAAACATGTTGAGGCCAAAAAACCACCACACAGGGCTTGTGGGGGACAAGTTCTTGCTTTGCTTCGTGATTCTTTGGCCAAGTTATATGACTCAGGGTGGTGGAGAATTTGCCAGAAGGGAGAACACAAAGGGAAGAACAACTCTGGTGTGTTGTTTCATGACATGGATGGTGTGCAATTTTCTGTCAAAATTGGCAGGGAGAACCCCAGAATTTTCAGCTACGCAGAGCTTTTCATAGGGTCAAACGGTTTCAGTGAAGACCAAGTTCTAGGGAGTGGAGGGTTTGGCAAAGTGTACAAAGCCGTTTTACCAAGTGATGGAACTTTGGTTGCTGTGAAGTGCTGTTTGGCAGAGAAAGGAAAGCAATTTGAGAAGAGTTTTGCAGCAGAGTTAACAGCTGTAGCTGATCTTCGCCACAAGAACCTTGTGAGGCTGAGGGGTTGGCATGATAATTTCAAGGGTGGTCCTCTTGAATGGGGACAAAGAGGGAAAATTGTGAAAGGTTTGGCTGCTGCATTGTACTATCTGCATGAACAACTAGAGACTCAAATCATTCATAGGGATGTTAAGACCAGCAATGTGATGCTTGATTCCCATTACAATGCTAGGTTGGGTGACTTTGGCATGGCAAGGTGGCTAGAACATGAGCTTGAGTATGAGTATGAGTATAACAATAGGAAAAAACCAACAACAAAAACTAGAAGTGGCCATTTCAGGCTAGGAGAGACATCAAGAATTGGTGGCACAATTGGGTATCTTCCACCTGAAAGCTTGCAGAAACCAAGCAATGCTACCTCCAAATCTGATGTATTCAGCTTTGGAATTGTTGTGCTAGAGGTGGTGTCTGGGAGGAGAGCAATTGATCTCACATACCCTGATGAACAAATCATTTTGCTTGATTGGATCAGAAGGCTTTCTGATGAAGGGAAGCTTCTGGAAGCAGTTGATTCTAGGTTACCAGATGGATCATACAAGTTCTCAGAAATGCAGCATTTCATTCACATAGGCCTCCTATGCACACTCCATGAGCCACAATTTAGGCCAAGTATGAAATGGGTTGTGGAAGCACTTTCCGATGTTTCTTTCAATTTACCATCACTCCCTTCTTTTCTCTCCCACCCTTTATACATCTCTTTGTCTTCAGCATCTGATACTAGTCACAGTCCTGGCAGCTCAAGTGGCACTAGCTCTACCACAGATAATGCTAGCCTAATCACCAACTACACTTCATCAAACTATGTCACAGCCAATGGTGAAACTGTGTATGTCACTGCTGAGCACAAAAACAGTGAAATCATCTCTTCTAAGAGCATGAATCACCACAAGCAACCATTTCCTGTGGTTGAAACTCCGAGGGAAGTATCATACAAGGAGATTGTTTCTGCTACAGATAACTTCTCAGATTCAAGAAGGGTGGCTGAGCTAGACTTTGGAACAGCTTACCATGGCATACTTGATGACAAATGCCATGTTTTGGTGAAACGCCTTGGGATGAAGACGTGTCCTGCATTGCGTGATAGATTCTCCAATGAACTCCGGAATCTAGGACGGCTGCGCCATAGGAATCTTGTTCAGCTTCGTGGATGGTGCACTGAGCAAGGAGAGATGCTTGTTATTTATGATTACTCCGCAAGAAGAATTCTCAGTCAACAGCTTCTGCATCATAACAGTGGAAGTAGAACTGGGAGTTTTGTACTTAAATGGCACCACAGGTACAACATAGTGAAATCATTAGCCTCTGCAGTTCTCTATCTGCATGAGGAATGGGATGAACAAGTGATCCACAGAAACATTACATCTTCAGCTGTCACTCTTGAACCAGATATGAATCCAAGACTCAGCTCTTTTGCTCTAGCCGAATTCTTATCAAGGAATGAGCATGGTCATCATGTGGTCACTGACACCAGAAAATCAGTCCGCGGGATTTTTGGCTACATGTCACCAGAATATGTGGAATCTGGTGAAGCAACCACTGAGGCTGATGTCTATAGTTTTGGTGTGGTTGTGCTTGAAGTTGTTAGTGGACAGATGGCGGTGGATTTCAGACAGCCAGAGGTGCTTTTGGTGAAGAAGGTTCATGAATTTGAGATGAGGAAAAGGCCATTGAAGGAATTAGCTGACATAAGACTCAATGGAGAGTACAATGATCAAGAATTGATGAGATTGATAAGGTTAGGAATTGCATGTACTAGTTGTAACCCGCAGTTAAGACCAAGCATGAGACAAATTGTAAGCATCCTTGATGGCAATGACAAATTACTTGTCCAAAATAACAAGGAGAGCAGGGAAGAATGGAGACAGATAAATGATTCTTCTTTGTCAATGATTAGGAGAATCCAAGCTCTAGGAATACACTAA 2460 0.4309 MQFNRLCIVLPPNSGEIVVPLEKGDQLESFQTPKKHVEAKKPPHRACGGQVLALLRDSLAKLYDSGWWRICQKGEHKGKNNSGVLFHDMDGVQFSVKIGRENPRIFSYAELFIGSNGFSEDQVLGSGGFGKVYKAVLPSDGTLVAVKCCLAEKGKQFEKSFAAELTAVADLRHKNLVRLRGWHDNFKGGPLEWGQRGKIVKGLAAALYYLHEQLETQIIHRDVKTSNVMLDSHYNARLGDFGMARWLEHELEYEYEYNNRKKPTTKTRSGHFRLGETSRIGGTIGYLPPESLQKPSNATSKSDVFSFGIVVLEVVSGRRAIDLTYPDEQIILLDWIRRLSDEGKLLEAVDSRLPDGSYKFSEMQHFIHIGLLCTLHEPQFRPSMKWVVEALSDVSFNLPSLPSFLSHPLYISLSSASDTSHSPGSSSGTSSTTDNASLITNYTSSNYVTANGETVYVTAEHKNSEIISSKSMNHHKQPFPVVETPREVSYKEIVSATDNFSDSRRVAELDFGTAYHGILDDKCHVLVKRLGMKTCPALRDRFSNELRNLGRLRHRNLVQLRGWCTEQGEMLVIYDYSARRILSQQLLHHNSGSRTGSFVLKWHHRYNIVKSLASAVLYLHEEWDEQVIHRNITSSAVTLEPDMNPRLSSFALAEFLSRNEHGHHVVTDTRKSVRGIFGYMSPEYVESGEATTEADVYSFGVVVLEVVSGQMAVDFRQPEVLLVKKVHEFEMRKRPLKELADIRLNGEYNDQELMRLIRLGIACTSCNPQLRPSMRQIVSILDGNDKLLVQNNKESREEWRQINDSSLSMIRRIQALGIH 819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01153 819 ProSitePatterns Serine/Threonine protein kinases active-site signature. 218 230 IPR008271 GO:0004672|GO:0006468
Cca07g01153 819 Gene3D Transferase(Phosphotransferase) domain 1 583 809 - -
Cca07g01153 819 Gene3D Transferase(Phosphotransferase) domain 1 183 398 - -
Cca07g01153 819 Pfam Protein tyrosine and serine/threonine kinase 506 781 IPR001245 GO:0004672|GO:0006468
Cca07g01153 819 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 319 818 - -
Cca07g01153 819 ProSiteProfiles Protein kinase domain profile. 500 788 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01153 819 ProSiteProfiles Protein kinase domain profile. 118 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01153 819 CDD STKc_IRAK 511 783 - -
Cca07g01153 819 SUPERFAMILY Protein kinase-like (PK-like) 102 427 IPR011009 -
Cca07g01153 819 SMART serkin_6 118 410 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01153 819 PANTHER - 191 318 - -
Cca07g01153 819 PANTHER - 1 182 - -
Cca07g01153 819 Gene3D Phosphorylase Kinase; domain 1 458 576 - -
Cca07g01153 819 Gene3D Phosphorylase Kinase; domain 1 87 182 - -
Cca07g01153 819 PANTHER - 319 818 - -
Cca07g01153 819 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 1 182 - -
Cca07g01153 819 SUPERFAMILY Protein kinase-like (PK-like) 476 781 IPR011009 -
Cca07g01153 819 Pfam Protein kinase domain 119 368 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01153 819 ProSitePatterns Protein kinases ATP-binding region signature. 124 147 IPR017441 GO:0005524
Cca07g01153 819 PANTHER RECEPTOR LIKE PROTEIN KINASE S.2 191 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01153 Cca-Chr7 28296876 28299413 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01153 481 783 Receptor kinase-like Gene Family AT3G53380 35.161 5.05e-55 201
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Cca07g01153 PK_Tyr_Ser-Thr 7.7e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01153 - - gmx:100796108 1405.96