Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01146 ATGTATCAGGGTGTTCCTGTTGCCTGCAGGACCCGTAGCAAGAGAAGGGTAGTTGGGAGTGGTTTGAGAATGAGAGTGAAGAGGAGAAAGGTGGATGGACGTGTTGTTGATTTGATTTGTTTGGATGATGAAGAGGGTCCAAGTGAGAAAATTGAATTGGGGTGTGGCGCTTTATCTTCATCCGGTGATTTACTCGAGGAGGGTTTTGAGTATTTGGGAGAGAGTGATGATGATCCTGAAGAGGTGATTGTTGTTGGTGACAGTGATGTTGGGAGTGATGAGGAAAAGGGGTTGAGGCATTGTGAGAAGATGTTTGAGGGTAAAGAAGAAAAGGAGTGTAAAGAGGAAAAGGTTAACTTTGAGGATGATGAGTACGGTGGTAGACGTGAAAAACCGGTTGTAATGACGCGAAATagtgagagtgagggtgaaagttgtggttcagatgaaagtgatagtgagGATGGGGAAACCAGTGATGAGGATTTTCGGGTTGATGATGATGGGGTGGAGATTGAATGCTCGAGCAGTGAGGAGAGTGATTCTTCTTGTGGtgatgatgatgatgaagatgaggatgatgaggatgataAAAAGATGGTGAAGGAGAGGGTGAGAAACGTGGAGAGTGCAACTGAAGGCAGTGGAGTTTGGAGAAGAAGAAAAGTTGAAAGGAAAGATAATGAGCAGGTAGATGAGGAGGAAGAGCGAGAGGAATGGATTGGTCCTGATTGTGCTAGTGCGACCTCTTGTAAATCTGCGTTTGCTAAGGAGGAGAGACTGAaagcagaagagaagcatgaagcaaagagaGTTGAAAGTGTCAGTGCTGATGCTGAAGTCTTTGTTGATCACTTTCAAAATTCTAGTAGTTCAACGCCTTCCGAGAATGAAGCACTAAATACAAGTCACCAAAGTGTGTCACTGCAGAAAGAGACCGGAGATTCAGCTAGAAATAAAAATAATAATGCCAATCCCAATGCCAATGTACATGACTGCTTGAATCTTGATGAACATGAAGGAAAAGGGCATAATCATGCCAGAAGAAAAGGTGTGAGAAATTTATCATCTTTTCAAAAAATCCAAGATAAGATAGGATATTCAGCTGAATATGTAATCAAGGAGGACAAGGGAAGGGCGCACAAAGAATGGTTTAATAGTCATAATCGTGAGAAGTTAAGAGTGGTGGATGATGACGAAACTAGAGACAGATATCATGAAATCCTAAGGATGCCATCAAGAACAAAGGACCAAGGTTTTAAATTCTTTACTGAATGCTTTTGGGGCAAGCATGATACTGTTAAAAATGATTCAATCGAGTTCGAAGAAAATGATCATGATGTTGGTCAGAGTCAAACTCCCCCATTAGTTTGTCGGGGTGAAATTCCCTTGAATTGGGACTTTATGAAAGAAGAACCTATTGAAAAAACAGAGTCTGAGAAGGAACTAGATATGTTGTGGGGTGAAATGGATATGTTGCTTCGAGCAGAAGAAATTGGGTTACAGGTTGGTAATATAGGGACAAATGAAGCAAGCGAAAATCCAGCCTCCCATTGCAAGCATGACACTATTTTTAATGAGGAGATTGGGATATATTGCAGATGGTGTGGTTGGATAGCTACGGAGATCAAATATATTACGCCACCATTTGTAAGCCTTGTGGATTCTGAAAGATCAGGTAGAAAGGGGTCAAACGGTGGAGCGAACACCCCACAATTTGATGGGGATCTGTTTAATGGTTCTGGAAATGACTCAAAGGCAGTGTGGTCTCACGGCACAGTTTGGGACCTTATTCCTGATATAAGACAAAGCTTGTATCCTCATCAACAAGAAGGGTTTGAGTTCATTTGGAAAAACTTGGATGGAAGCATTGACCTTGCCAAGATAAAGAGGGTTGGCCCGCCTTGTGAAGGTGGATGCATTATTTCTCATGCTCCTGGAACAGGAAAGACAAGGTTGACCATGGTGTTTCTTCAGACATATTTGCAAGTGTTTCCAAAGTGTCTACCTGTTATCATTGCTCCTGCTAACATATTGCTTACTTGGGAAGATGAGTTGAGGAAGTGGAACATAGGAATTCCATTCCATAACCTGAACAATGCTGATTTATCAGGAAAAGAATATGCCATAAATAAAATTGACTGGTCTGGCAATCAACAGCATAATAAGGATACCATACGAATGATGAAGTTGTGTTCATGGTACAAAGAAAAGAGCATTCTATTAATCAGCTACAATTTGTATGAAAAGCTAGCAGGGGGAAAGTCTGAAGCTGATGGTGAAAAAGATAAGAAAAATAGGAAGATGAAAAAAGAGAAAAGTGCAGGGACTAGGGAGCACATTGAAAAAAATGCTTTGGGAGAGGTTCTGCGTGACAAACCTGGTTTGCTAATTCTTGATGAAGGGCACACACCAAGGAATCATCGTAGTTGCATTTGGAAGGTTCTATCAGAAAGTAGAACTCAGAAGCGAATCCTTCTCTCTGGGACACCTTTCCAGAACAATTTTATGGAACTTTACAATATTTTGTGTTTAATGAAACCATCCTTTCCTGACAGCATACCCCAAGAACTCAAGAAGTTTTGTCAAAGTAGACTAATGCATGACAGACAAGCTTCAAAAGATGTGAATTGGGAACCCGCTACTTCTGGAAATCCAGCTGATGAGAAAATAAACCAGCTAAAAATGCTGATGACTCCCTTTGTTAATGTTCACAAAGGTAGCATTCTTCAGAAGAACCTTCCTGGCTTGAGAGATTGTGTGCTGGTTTTGCAGCCAGATGGTTTCCAGCAACAAATGTTGGAGAGCATTGAATGTTCTCAAAATGGACTGAACTTTGAACACAAGTTGGCCTTGGTCTCAGTCCATCCATCCCTTTTCCTCAACTGCTCTCTGTCAGAAAAAGAAGAAGCTGTCATTGACAAGGATCGGTTGGAAAAGCTTAGGCCAAAACCTTATGGAGGGGTGAAAACCAAGTTTTTGATGGAGTTTGTAAAACTTTGTGATGCAGTTGATGAGAAAGTCCTTGTTTTCAGCCAATTCATTGATACCTTGTGCTTAATTAAGGAGCATCTTGAATCCACCTTTAATTGGTCTGTGGGCACGGAAGTGTTGTATATGTATGGCAAGGTTGACCAAAAGCAAAAACAGTCCCTCATTCATAGCTTCAATGATGCAAATAGCCAAGCAAAGGTGTTGCTTGCTTCTATAAAAGCATGTTCTGAAGGCATTAACTTAACTGGAGCTTCAAGGGTTGTGCTTGTTGATGTTGTTTGGAACCCCTCAGTTGAAAGGCAAGCTATTTGCCGTGCATATAGACTAGGGCAAAAGAGGGTTGTTTACACTTACCATCTTCTTGCACAGGACACCCCTGAATTCACCAAGTATTGTAAACAAGCACAAAAGGACCGGTTATCTGAACTGGTTTTCTCAAATAAAAATGCTGAAAGTGATAAGGTCAAGAGTTGTGGAGTAGAGTTTGAGGATAAGGTTCTTGATATCATGCTTCAGCATAAAAATCTTAAGGACATGTTTGCTGAATGTTTGCTACAACCAAAGGACAGAGATTTGGAAACTGGCCCCCTAATGCTCTGA 3594 0.399 MYQGVPVACRTRSKRRVVGSGLRMRVKRRKVDGRVVDLICLDDEEGPSEKIELGCGALSSSGDLLEEGFEYLGESDDDPEEVIVVGDSDVGSDEEKGLRHCEKMFEGKEEKECKEEKVNFEDDEYGGRREKPVVMTRNSESEGESCGSDESDSEDGETSDEDFRVDDDGVEIECSSSEESDSSCGDDDDEDEDDEDDKKMVKERVRNVESATEGSGVWRRRKVERKDNEQVDEEEEREEWIGPDCASATSCKSAFAKEERLKAEEKHEAKRVESVSADAEVFVDHFQNSSSSTPSENEALNTSHQSVSLQKETGDSARNKNNNANPNANVHDCLNLDEHEGKGHNHARRKGVRNLSSFQKIQDKIGYSAEYVIKEDKGRAHKEWFNSHNREKLRVVDDDETRDRYHEILRMPSRTKDQGFKFFTECFWGKHDTVKNDSIEFEENDHDVGQSQTPPLVCRGEIPLNWDFMKEEPIEKTESEKELDMLWGEMDMLLRAEEIGLQVGNIGTNEASENPASHCKHDTIFNEEIGIYCRWCGWIATEIKYITPPFVSLVDSERSGRKGSNGGANTPQFDGDLFNGSGNDSKAVWSHGTVWDLIPDIRQSLYPHQQEGFEFIWKNLDGSIDLAKIKRVGPPCEGGCIISHAPGTGKTRLTMVFLQTYLQVFPKCLPVIIAPANILLTWEDELRKWNIGIPFHNLNNADLSGKEYAINKIDWSGNQQHNKDTIRMMKLCSWYKEKSILLISYNLYEKLAGGKSEADGEKDKKNRKMKKEKSAGTREHIEKNALGEVLRDKPGLLILDEGHTPRNHRSCIWKVLSESRTQKRILLSGTPFQNNFMELYNILCLMKPSFPDSIPQELKKFCQSRLMHDRQASKDVNWEPATSGNPADEKINQLKMLMTPFVNVHKGSILQKNLPGLRDCVLVLQPDGFQQQMLESIECSQNGLNFEHKLALVSVHPSLFLNCSLSEKEEAVIDKDRLEKLRPKPYGGVKTKFLMEFVKLCDAVDEKVLVFSQFIDTLCLIKEHLESTFNWSVGTEVLYMYGKVDQKQKQSLIHSFNDANSQAKVLLASIKACSEGINLTGASRVVLVDVVWNPSVERQAICRAYRLGQKRVVYTYHLLAQDTPEFTKYCKQAQKDRLSELVFSNKNAESDKVKSCGVEFEDKVLDIMLQHKNLKDMFAECLLQPKDRDLETGPLML 1197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01146 1197 Gene3D - 915 1188 IPR027417 -
Cca07g01146 1197 MobiDBLite consensus disorder prediction 107 137 - -
Cca07g01146 1197 MobiDBLite consensus disorder prediction 558 576 - -
Cca07g01146 1197 MobiDBLite consensus disorder prediction 145 196 - -
Cca07g01146 1197 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 3 1191 IPR044567 GO:0080188
Cca07g01146 1197 Pfam Helicase conserved C-terminal domain 1001 1108 IPR001650 -
Cca07g01146 1197 MobiDBLite consensus disorder prediction 197 230 - -
Cca07g01146 1197 SMART helicmild6 1023 1108 IPR001650 -
Cca07g01146 1197 MobiDBLite consensus disorder prediction 287 355 - -
Cca07g01146 1197 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 631 849 IPR014001 -
Cca07g01146 1197 MobiDBLite consensus disorder prediction 287 330 - -
Cca07g01146 1197 Pfam SNF2-related domain 624 935 IPR000330 GO:0005524|GO:0140658
Cca07g01146 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 793 1150 IPR027417 -
Cca07g01146 1197 MobiDBLite consensus disorder prediction 107 242 - -
Cca07g01146 1197 MobiDBLite consensus disorder prediction 756 778 - -
Cca07g01146 1197 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 3 1191 - -
Cca07g01146 1197 MobiDBLite consensus disorder prediction 556 576 - -
Cca07g01146 1197 SMART ultradead3 601 857 IPR014001 -
Cca07g01146 1197 CDD SF2_C_SNF 965 1119 - -
Cca07g01146 1197 Gene3D - 589 898 IPR038718 -
Cca07g01146 1197 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 996 1149 IPR001650 -
Cca07g01146 1197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 596 874 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01146 Cca-Chr7 28174029 28178494 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01146 1006 1160 RAD5 or RAD16-like Gene Family AT5G43530 36.774 1.73e-19 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca07g01146 SNF2_N 2.4e-19 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01146 K10875 - gmx:100806733 1363.21