Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01140 ATGTATCAGCAGGGGCTTCCTGTGGCCTTCAGGACGCGTAGCTACAAGAAGGAAAGTGTGGTTAGGAGTGATTTGATAACGAGTCGGAAGAGGAAAAGGGTGGATGAACATCATGATGATGACGACGACGTGGTTTTTGTTGAAGTAAAATTAGAAGGTGAAGGGGGTGCAAGTGGGAAAGTTGATTCTGGGCGTGGCGCTTCATCTTCATCACATAGTTCTTTCAAGGGTGAAAGGGTATCTGAATTTTTGGGAGAGAATGTGGAGGAGCCTATTGAAATCGATGACAGTGATGATGATGGAAGTGGTGATGAAGAGGGGTTGAGGCCTTCCGAGAAGAGAGTTGAGGTTAGTGAAGAAGGGGGGAGCCAGGAGAGTAAAGGGTGTTCTGTGTTTGCTGATAAAGTTGAGAACTTTGGTGATCACCGAGGTAGTGGTGGACCTGAAGACCCTATTTTATTGACGGTTGATGGGGATAGTACGAGTgaagaagaagaggaggaggatgaagaagaTGGCGTGGCAGGAAGTAGTTTAGATGATGATGGGTATGATTTTCTTTTGTCTCAAACGGAGAGTGAGGATGGTGAAACTAGTGATGAAGATTTTCAGGTTGATGATAAGAATGAATACTCGAGCGGTGAGGATAATGATTCTTGGTGTGAGGATCATAGGGGGCGATGCAGGAAGATAGTGAAGGAGCGGGTGAGAAAGTTGGAGAGTGAAGCTGAAAGGAGAGGTGTCTGGAGAAGAAGGAAAGGTGAAAGGAAAGATAATGAACAGGGAGAGGAGTTGGAGGAACAATTTATGGGTGCTGATTGTGCTAGTGCGACCTCTAGTAAATCTGAGATTTCTAAGGATGAAGCAAAGAGAGTAGAAACTGTCAATGCTGGTGCAAAAGTCTTTGGTGATCACTGGGAATTTTCAGGTTGTTCTATGACATCTGaagctaaaacaatagaagataagaaaagatatagaGCTCATCATATTGTAATCAAGGATGTCAAGAGGGGAAAGCCACAGCCGCGGGAAGATTGGTTTAATAGCAATGATCGGGAGAAGGTAAGTGTGGTGGATGATGAAATTCGTGACAAATATCATGAAGTCCTAAGGATGCCATCTAGAAGAAAGGTCCAAGGTTTTGAATTCTTTACTGAGTGCTTTTGGGGTAAGCATGATTCAGATAAAGATGGTTCACATGTGTTGGAAGAAAAGGATAGTGATGTTGGTCATGAGGGTCAGAGTCAACCATTAGCTTGTAGTGAGGTAATCCCATTAAATTGGAACTCTACCAAGGAAGAACCGATTGAAAAATCAGAGTCTGAGAAGGAGTTAGAAAAGTTGTGGGATGAATTGGATATGGTGATTCGAGGTGAAGAAATTGGGTCCCAGGTTGGTAATATAGGGACAAATGAAGCAAGAGAAAATGAAGAAACTTCAGCCTTGCATTGCAAGCATGATTTTATTTTTAACGAGGAAATTGGGATACAGTGCAGATGGTGTGGTTGGGTTGCCACTGAAATCAAATATATCACGCCACCATTTGTTGATTCTAAAAGATCAGGTAAAAGGGTGTCATCTGGTGGAGTGAACAACACCTCACAATTTCATGGGGATCTGTTTGATGATTCTGGTAAAGACTCTAGGTCAGAGGCAGATTTGTCTCGCAATGATGGCACAGTTTGGGATCTTATTCCTGATATAAAACAAAGCTTGTATCCTCATCAACAAGAAGGTTTTGAGTTTATTTGGACAAATTTGGAAGGAACCACTAACCTTGCCAAGTTGAAGAAGGTTGATGCGAAACGTGAAGGTGGGTGTATTATTTCTCATGCTCCTGGAACGGGAAAGACAAAGTTGACCATGGTGTTTCTTCAGACATATTTGCAAGTGTTTCCAAAGTGTCTACCTGTTATCATTGCTCCTTCCAACATATTGCTTACCTGGGAAGATGAGTTGAGGAAGTGGAATATTGGAATTCCATTCCATAACATGAACAATGCTGTTTTATCAGGAAAAGAACATGGCATTAATGAAATTGACTGGTTTGGCAATCAGAGGCAGAATAAGGATGCCATACGGATGATAAAGTTGTGTTCATGGTACAAAGAGAAGAGCATTCTGTTAATCAGCTATAATTTGTATGAGAAGCTAGCAGGAGGCAAGTCTGAAGTTGATATGGAGAAAGAGAAGAAAAATAGAAAGGAGAAAAAAGAGAAGAAACGTGCAAGGACTAGGGAGAAAATTGAAACTGCAATTGGAAAGATGGGAAAGGTTTTGCGTGAGTATCCTGGTTTGCTAGTTCTTGATGAGGGGCACACGCCTCGGAATCAACAAAGTTGTATTTGGAAGGTTCTTTCCGAAAGTAGATCTCACAAGCGAATACTTCTCTCGGGGACTCCTTTCCAGAACAATTTTGTGGAACTCTACAATATTTTGTGCTTGATGAAACCTTCCTTTCCTGACAGCATACCACAAAAACTCAAGAAGTTTTGCCAGAGTAGACTAAGGCAGGAAAAGAAGTCTTCAAAAGATTTCAGTTGGGAACCTGATTGTTCTGGAAATTCAGCTGATGAGAAAATAAAACAGCTAAAGTTGCTGATGAATCCATTTGTTAATGTTCATAAAGGTAGCATTCTTCAGAAGAACCTTCCTGGGTTGAGAGATTGTGTTCTGGTTTTGAAGCCAGACAGTTTGCAGCAAGAAACTCTAGAGAGCATTGAATGTTCTCAAAATGTACTGAACTTTGAACACAAGTTGGCCTTGGTCTCAGTCCATCCATCCCTTTTCCTTGACTGCTCTCTCTCAAAACAAGAAGAATCTGTTGTGGACAAGGATAAGTTGGAAAATCTTAGATTGAACCCTTATGTAGGGGTCAAAACCAAATTTTTGATAGAGTTTATAAGACTATGTGATGCAGTTAATGAAAAAGTTCTTGTTTTCAGCCAATTCATAGATACCTTAAGCTTAATTAAGGACCAACTTGAGTCAGCCTTTAATTGGTCTGTGGGAACAGAAGTGTTGTATATGTATGGCAAGCTTGACCAAAAGCAAAAACAGTCCCTCATTCATAGCTTCAATGATGCAAATAGCCAAGCAAAGGTGTTGCTTGCTTCTATAAAAGCATCTTCTGAAGGCATTAACTTAATTGGTGCTTCAAGAGTCGTTCTTCTTGATGTTGTTTGGAACCCCTCAGTGGAAAGGCAAGCTATTTGCCGAGCATATAGACTCGGACAAAAGAGGGTTGTTTACACTTACCATCTTCTTGCACAGGGCACCCCTGAGTGCACAAAATATTGTAAACAAGCAGAAAAGAACCGGTTATCTGAACTGGTTTTCTCTAATAGAAATGCTGAAAGTGATAACCTCAAGATTTCTGGAGTAAAGTTTGAGGATAGAGTTCTTGATATTATGGTTCAGCATGAAAAACTCAAGGGTATGTTTGGGGAACGTCTGGTTCAACCATAG 3471 0.4042 MYQQGLPVAFRTRSYKKESVVRSDLITSRKRKRVDEHHDDDDDVVFVEVKLEGEGGASGKVDSGRGASSSSHSSFKGERVSEFLGENVEEPIEIDDSDDDGSGDEEGLRPSEKRVEVSEEGGSQESKGCSVFADKVENFGDHRGSGGPEDPILLTVDGDSTSEEEEEEDEEDGVAGSSLDDDGYDFLLSQTESEDGETSDEDFQVDDKNEYSSGEDNDSWCEDHRGRCRKIVKERVRKLESEAERRGVWRRRKGERKDNEQGEELEEQFMGADCASATSSKSEISKDEAKRVETVNAGAKVFGDHWEFSGCSMTSEAKTIEDKKRYRAHHIVIKDVKRGKPQPREDWFNSNDREKVSVVDDEIRDKYHEVLRMPSRRKVQGFEFFTECFWGKHDSDKDGSHVLEEKDSDVGHEGQSQPLACSEVIPLNWNSTKEEPIEKSESEKELEKLWDELDMVIRGEEIGSQVGNIGTNEARENEETSALHCKHDFIFNEEIGIQCRWCGWVATEIKYITPPFVDSKRSGKRVSSGGVNNTSQFHGDLFDDSGKDSRSEADLSRNDGTVWDLIPDIKQSLYPHQQEGFEFIWTNLEGTTNLAKLKKVDAKREGGCIISHAPGTGKTKLTMVFLQTYLQVFPKCLPVIIAPSNILLTWEDELRKWNIGIPFHNMNNAVLSGKEHGINEIDWFGNQRQNKDAIRMIKLCSWYKEKSILLISYNLYEKLAGGKSEVDMEKEKKNRKEKKEKKRARTREKIETAIGKMGKVLREYPGLLVLDEGHTPRNQQSCIWKVLSESRSHKRILLSGTPFQNNFVELYNILCLMKPSFPDSIPQKLKKFCQSRLRQEKKSSKDFSWEPDCSGNSADEKIKQLKLLMNPFVNVHKGSILQKNLPGLRDCVLVLKPDSLQQETLESIECSQNVLNFEHKLALVSVHPSLFLDCSLSKQEESVVDKDKLENLRLNPYVGVKTKFLIEFIRLCDAVNEKVLVFSQFIDTLSLIKDQLESAFNWSVGTEVLYMYGKLDQKQKQSLIHSFNDANSQAKVLLASIKASSEGINLIGASRVVLLDVVWNPSVERQAICRAYRLGQKRVVYTYHLLAQGTPECTKYCKQAEKNRLSELVFSNRNAESDNLKISGVKFEDRVLDIMVQHEKLKGMFGERLVQP 1156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01140 1156 MobiDBLite consensus disorder prediction 726 746 - -
Cca07g01140 1156 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 6 1156 IPR044567 GO:0080188
Cca07g01140 1156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 563 840 IPR027417 -
Cca07g01140 1156 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 599 820 IPR014001 -
Cca07g01140 1156 SMART ultradead3 569 828 IPR014001 -
Cca07g01140 1156 MobiDBLite consensus disorder prediction 22 49 - -
Cca07g01140 1156 MobiDBLite consensus disorder prediction 22 222 - -
Cca07g01140 1156 Gene3D - 547 870 IPR038718 -
Cca07g01140 1156 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 967 1137 IPR001650 -
Cca07g01140 1156 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 6 1156 - -
Cca07g01140 1156 Pfam Helicase conserved C-terminal domain 964 1079 IPR001650 -
Cca07g01140 1156 MobiDBLite consensus disorder prediction 240 264 - -
Cca07g01140 1156 CDD SF2_C_SNF 958 1090 - -
Cca07g01140 1156 MobiDBLite consensus disorder prediction 104 121 - -
Cca07g01140 1156 MobiDBLite consensus disorder prediction 159 178 - -
Cca07g01140 1156 MobiDBLite consensus disorder prediction 88 103 - -
Cca07g01140 1156 Coils Coil 728 756 - -
Cca07g01140 1156 SMART helicmild6 994 1079 IPR001650 -
Cca07g01140 1156 MobiDBLite consensus disorder prediction 205 222 - -
Cca07g01140 1156 MobiDBLite consensus disorder prediction 63 77 - -
Cca07g01140 1156 MobiDBLite consensus disorder prediction 240 288 - -
Cca07g01140 1156 Gene3D - 886 1149 IPR027417 -
Cca07g01140 1156 Pfam SNF2-related domain 587 907 IPR000330 GO:0005524|GO:0140658
Cca07g01140 1156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 766 1128 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01140 Cca-Chr7 27972914 27977564 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01140 977 1126 RAD5 or RAD16-like Gene Family AT5G43530 37.908 1.51e-18 90.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca07g01140 SNF2_N 1.4e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01140 K10875 - gmx:100812737 1368.99