Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01139 ATGACTTCACCAAATTACGAGGATTCATGCATTGAATACTATGAGATGGACAACCAATTTTGCAACTGTGACAAGAATGACTCTGGTCCCTATTATGAGTTCTTAGAATATCCACTTTGTGTCCCACAAGACTCATTAGAAAGTTTGGAAGGGATTAACTTCTGGGATGACATGGATTTGATTTCGATCGATTTCATGTTTTTCCACTCTTCGGATGAGACCATGGAGCAATTAGAAAATAATAAAGATGAAAAGAAACCATTTTTAAGGGATGCATCAAAAACTAATCATGGGTCTCCATTAGAGTTGCAAAACATGTTAGCAAAGTCTAGAACTGAGATCTTGGAAGAAAATGAAACGTCTGATGGATGGGAAGACTACAAAGTTGATTTTGAAATTTCAATAACGCCAAAGAGAAATGCTATGAAAAGGAAAAGAAGGTGCAAGAAGAGAACATATAGCAAAAGAAGATGCAGCCATTGTAATGTGAAAGAAACACCTCAATGGAGAGTTGGTCCTTTGGGGAGAAACACTTTGTGCAATGCATGTGGAATGAGATACAAGTCAGGGAGATTATTGCCAGAGTATAGACCTGCGTCGAGTCCAACTTTCAACGTGAACAAGCATTCAAATGTTCATAAGAAGATACTAATAATGAGAAGTTAA 666 0.3709 MTSPNYEDSCIEYYEMDNQFCNCDKNDSGPYYEFLEYPLCVPQDSLESLEGINFWDDMDLISIDFMFFHSSDETMEQLENNKDEKKPFLRDASKTNHGSPLELQNMLAKSRTEILEENETSDGWEDYKVDFEISITPKRNAMKRKRRCKKRTYSKRRCSHCNVKETPQWRVGPLGRNTLCNACGMRYKSGRLLPEYRPASSPTFNVNKHSNVHKKILIMRS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01139 221 MobiDBLite consensus disorder prediction 76 92 - -
Cca07g01139 221 CDD ZnF_GATA 157 206 IPR000679 GO:0006355|GO:0043565
Cca07g01139 221 PANTHER GATA TRANSCRIPTION FACTOR 13-RELATED 76 220 - -
Cca07g01139 221 SMART GATA_3 152 202 IPR000679 GO:0006355|GO:0043565
Cca07g01139 221 Gene3D - 152 203 IPR013088 GO:0006355|GO:0008270
Cca07g01139 221 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 155 214 - -
Cca07g01139 221 PANTHER GATA TRANSCRIPTION FACTOR 76 220 - -
Cca07g01139 221 Pfam GATA zinc finger 158 192 IPR000679 GO:0006355|GO:0043565
Cca07g01139 221 MobiDBLite consensus disorder prediction 76 95 - -
Cca07g01139 221 ProSiteProfiles GATA-type zinc finger domain profile. 152 188 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01139 Cca-Chr7 27968073 27968738 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01139 143 220 C2C2-Gata Transcription Factor Family AT5G66320 58.140 1.52e-30 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Cca07g01139 GATA 1.2e-14 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01139 - - ccaj:109790639 471.085