Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01130 ATGTTTGTGAGCAAATATGGAAAATACTTGTCCAGCACAATGTTTCTTAAGCTTCCTAATGGTGCAGAATGGAGGGTAAACTTGGAGAAAATCAATGGTAGTGTTTGGTTTCAAAAAGGTTGGGATGAGTTTGTGAAGCATCATTCTTTAGCCCATGGACACTTACTGATTTTCAGATATGATGGAGCATCCCATTTTCATGTACTCATATGTGATATGAGTGGTACAGAGATAGAATACCCTATCAACAAAGCAAATCACAAAAGGGCCAGAATCAAAAGTGAAGAAATTCAACATAATAAGATACGAAGAACAAATGGATATAATAAAAAGGGTAAGAGAAAAATTGAAGGGTCATCCATTAGTAAGTATGGAGTTCTTGAAGCAGTGAATACTTCCTTCACGGTGATAATGAAAGCAAGCCACTTAATTAGGCAGTGCATGTATCTGCCAAAGGGTCCATTGAAGAGTTTCATAAAATCTGGTGAACAATATGTAATGCTTCTAGTTGGAGATAGATCATGGAGGGTTAAGTTGAGCCATTATCACAATAAATCATCAAGTTATTTTACTGCACAATGGCCAGCTTTTGCGAGGGATAACGATTTAAAAGAAGGAGATGCTTGCTTGTTTCAACTCCTAAACAGTAGTGATGACTTGGTGATGAAGGTTTCGATTTCTAGATACTCATCTCTTAAAAGGCCAATAACCTAA 714 0.3669 MFVSKYGKYLSSTMFLKLPNGAEWRVNLEKINGSVWFQKGWDEFVKHHSLAHGHLLIFRYDGASHFHVLICDMSGTEIEYPINKANHKRARIKSEEIQHNKIRRTNGYNKKGKRKIEGSSISKYGVLEAVNTSFTVIMKASHLIRQCMYLPKGPLKSFIKSGEQYVMLLVGDRSWRVKLSHYHNKSSSYFTAQWPAFARDNDLKEGDACLFQLLNSSDDLVMKVSISRYSSLKRPIT 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01130 237 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 119 228 - -
Cca07g01130 237 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1-LIKE 2 104 - -
Cca07g01130 237 CDD B3_DNA 2 72 IPR003340 GO:0003677
Cca07g01130 237 CDD B3_DNA 133 228 IPR003340 GO:0003677
Cca07g01130 237 ProSiteProfiles B3 DNA-binding domain profile. 133 230 IPR003340 GO:0003677
Cca07g01130 237 SUPERFAMILY DNA-binding pseudobarrel domain 2 74 IPR015300 -
Cca07g01130 237 Gene3D - 115 231 IPR015300 -
Cca07g01130 237 PANTHER B3 DOMAIN-CONTAINING 119 228 - -
Cca07g01130 237 PANTHER B3 DOMAIN-CONTAINING 2 104 - -
Cca07g01130 237 Pfam B3 DNA binding domain 134 227 IPR003340 GO:0003677
Cca07g01130 237 Pfam B3 DNA binding domain 2 72 IPR003340 GO:0003677
Cca07g01130 237 Gene3D - 1 75 IPR015300 -
Cca07g01130 237 SMART B3_2 134 230 IPR003340 GO:0003677
Cca07g01130 237 SMART B3_2 2 74 IPR003340 GO:0003677
Cca07g01130 237 ProSiteProfiles B3 DNA-binding domain profile. 1 74 IPR003340 GO:0003677
Cca07g01130 237 SUPERFAMILY DNA-binding pseudobarrel domain 131 226 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01130 Cca-Chr7 27646483 27647467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01130 5 98 B3 DNA Binding Superfamily AT1G49475 38.298 3.33e-22 88.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Cca07g01130 B3 9.8e-14 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01130 - - gmx:100793986 300.827