Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01123 atgggtgaagaagtgaaaaaaattgttctagagtcggtgctaaagaagaaaaagagggaagaggaatgggcgttggcgaataagcaagaACTCGAAGTGGCGAAGAAGAAGAGAGCCGAGAGCCGTAACCTCATCCACAACAGAGCTAAGCAGTACGCAAAGGAGTACGATGAGCAGGAGAAGGATATGATTAGGTTGAAACGTGAGGCCAAGTTGAAAGGTGGGTTTTATGTCAATCCAGATGCTAAGCTCTTATTCACATCCGTGGTATTTATGCAATGCACCCCAAGACAAGGAAAATCTTGCAGCTATTACGATTGA 321 0.3271 MGEEVKKIVLESVLKKKKREEEWALANKQELEVAKKKRAESRNLIHNRAKQYAKEYDEQEKDMIRLKREAKLKGGFYVNPDAKLLFTSVVFMQCTPRQGKSCSYYD 106
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01123 106 Coils Coil 49 69 - -
Cca07g01123 106 PANTHER 60S RIBOSOMAL PROTEIN L7 8 87 IPR039699 -
Cca07g01123 106 PANTHER 60S RIBOSOMAL PROTEIN L7 8 87 - -
Cca07g01123 106 Pfam Ribosomal L30 N-terminal domain 10 79 IPR012988 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01123 Cca-Chr7 27380713 27381033 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01123 4 87 Cytoplasmic Ribosomal Protein Gene Family AT3G13580 73.810 4.12e-36 121
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01123 K02937 - gmx:100813342 146.362