Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01115 ATGGAAAGTAATGCTAGTGAAAACTTTGTTGCCACATTCTCCTCCACCACCACCtcttcaacatcatcatcaccaacatcttctacctcaacctcaaactcTTGCACCAAGCAGGATCCCCCAGATGATTCAACATCAGCTCAAAACCAAAACACCCCAAATAGCAAAAAAAGACAAAGAAATGATCACAATGAGAACAAAGACCACCCTAGTTACAGAGGTGTTAGAATGAGGGCATGGGGCAAATGGGTGTCTGAGATCCGTGAGCCAAGGAAGAAGTCAAGAATATGGCTTGGAACATACCCTACTGCTGAAATGGCTGCTAGAGCACATGATGTTGCAGCTTTAGCCATCAAGGGTCATTCGGCTTACCTCAATTTCCCCAATTTGGCTCATGATCTTCCAAGGCCTATCACCACATCTCCCAAGGATATTCAAGCTGCAGCAGCAAAAGCAGCAACCACTTTCTTTGATCATGTTGACAAAGATGAACAAAACCAGCAGGCTTCATCTTCTAATATATGCATGGACAGTACTGAAGGAGGGCATGTTCAAGCTGAACAAGCCTCATCTTCAACTCTTTCATCCATGGACACTACTCAAGATTCTTCAAGTTCTCTCTCTACTGCAGATGATGACACACTGTTTGACCTACCAGATCTTTTCCCTGATGGAAACACTGCACTTTTCTCCTATTCTTCTTCTAATTGGCATTTATGTGCACTTGATAGTGGATTCCGGATTGAAGAGCAATTTTTCTGGGAAAATTACTAG 774 0.4057 MESNASENFVATFSSTTTSSTSSSPTSSTSTSNSCTKQDPPDDSTSAQNQNTPNSKKRQRNDHNENKDHPSYRGVRMRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGHSAYLNFPNLAHDLPRPITTSPKDIQAAAAKAATTFFDHVDKDEQNQQASSSNICMDSTEGGHVQAEQASSSTLSSMDTTQDSSSSLSTADDDTLFDLPDLFPDGNTALFSYSSSNWHLCALDSGFRIEEQFFWENY 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01115 257 Gene3D AP2/ERF domain 71 129 IPR036955 GO:0003700|GO:0006355
Cca07g01115 257 MobiDBLite consensus disorder prediction 1 55 - -
Cca07g01115 257 PRINTS Ethylene responsive element binding protein signature 72 83 IPR001471 GO:0003700|GO:0006355
Cca07g01115 257 PRINTS Ethylene responsive element binding protein signature 94 110 IPR001471 GO:0003700|GO:0006355
Cca07g01115 257 ProSiteProfiles AP2/ERF domain profile. 71 128 IPR001471 GO:0003700|GO:0006355
Cca07g01115 257 PANTHER ETHYLENE RESPONSE FACTOR 5 257 - -
Cca07g01115 257 MobiDBLite consensus disorder prediction 1 73 - -
Cca07g01115 257 MobiDBLite consensus disorder prediction 56 73 - -
Cca07g01115 257 CDD AP2 70 130 IPR001471 GO:0003700|GO:0006355
Cca07g01115 257 SMART rav1_2 71 134 IPR001471 GO:0003700|GO:0006355
Cca07g01115 257 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 5 257 - -
Cca07g01115 257 SUPERFAMILY DNA-binding domain 71 129 IPR016177 GO:0003677
Cca07g01115 257 Pfam AP2 domain 70 121 IPR001471 GO:0003700|GO:0006355
Cca07g01115 257 MobiDBLite consensus disorder prediction 167 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01115 Cca-Chr7 27020923 27021821 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01115 59 253 AP2-EREBP Transcription Factor Family AT2G44940 54.286 2.80e-68 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca07g01115 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01115 - - gmx:100792964 322.783