Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01110 ATGGGGAGTATGGGTGACTCGGACAGAAAACGACGTCACTTTAGCTCCTTGTCCCCTACGCCTGCAGCTGCTACTACCAAGAAGCTACCCTTCTTGCCCGTTTCTGAAGACAAAAAGCTTGATATTGTTGTACTTCAGTATCAAAATCAAAAGCTTACACAAAAACTAGAAACTCAGAAGTTAGAGTATGCAGCTCTTGAGAATAGAGTTTCTCAACTGAAGGAGAGGCAAAAGTCATATGATTCCACTTTAGCAGTGGTCAGGAAGTCTTGGGAGCAGCTGGTTAATGATTTGGAGTCATGTTCTGAATGTACGAGAGAGTCAAGCAGCAAATCAAATTCTAGATTTTCATCAACCATGGAAGATGGTAGTCCATCTACTGTTCAGGATGTGTTTCTTGGCCGGCTAATGCAAACTGGTGCAACTGAATGTGCCTCCACATGTAACTATGCAAACCAGATGGAAGAGCAAACGGAAATTAGTACTGAAAAAGCTAAAAGCGTTTTAAAAAATATAGTCATATCTGTTAATAACCTTTGGGTTCTGATGGATGGATTGCGTACTGCATTACTGAAAAAGCTTCCTGGAGATGTTTTGTGTAGGCAGACATTGTCCTCTGATCTTGAGGTGAAAGTTAAAAACTTGAGATTGGAATTCAGTGAACTTCATTTGAAGCACAAGTCTTTAGCAAGTGAGTTCCAAATTCAGAGAGATCTTGATGCCAAAAATAAAGCTGACCTTGAAAGATTAAAAGGGGAACTGGCAAGCACTGTTGAAGAGCTGGAAGAAAGCAATCACAAACTGGCAACTCTTAAGGCAGAGAGAGATGCTGCAAAAGGGGCGGTTCTCCCAGTCTTGAATGTTGGAAGTACTCACATTCCTAATGATAAAATCAGAGATAAGCAAAAGGATTTGCAAGATATGGAATCTACTTTGAAGGAGCTATTGGAACAAGGTTCAACTCGATTAATTGAACTGAAAAGTCTTCACGAGGAAAGAATACGAATATTACAGCAGTTATGTGATCTACAGAACACTTTGAAGAATCTGAAGTGTATTACTTCTTCCCATGCTTTTCAATTGGTTAAAGATCAGATGGATAAATCGAAATCAGAAGTTCTGGAGTATCAGGCCTTATATGAGAAACTACAGGTTGAGAAGGATAATCTTGTCTGGAGGGAGAGGGAGTGGTACATTAAAAATGATTTAGCAGATATTTTTCAAAGGTCTGCAGCAGTTTCAGATTTTAGAGTGGCTGATATACGCACTGAGATACAGAAAAAGATAGAGGAAAGAAATATGATTGAAAATAAGCTGAAAGAGGAAGCAAGAGAACCGGGAAGGAAACAAATCATTGCTGAATTTAAATCTCTGGTTTCTTCATTTCCTGAAGAAATGGGGTCTATGCAAAGTCAAATAAGAAAATATAAAGAATCAGCTTCGGATATTCATTCTCTGCGTGCAGATGTGCAGTCTGTTTCTAGTATTCTTGACAGGAAGGTAAAAGAATGTGATGCATTTTCTGTCAGGTCTGCTGGTCAACTTGCTGAGATAAAGAGGCTGCTTGGTGTGCTTCAAGATTTGAGAGAGAGTGAGCAGGACTTGAAGTTGATATTGGAAATGTTTAGACGTGAGTCCATTGATTCAAGGGATGTCATGGAAGCACGAGAAGCAGAATACAGAGCTTGGGCACATGTCCAGAGTTTGAAATCATCTCTTGATGAGCACACCTTAGAACTTCGAGTTAAGACGGCCAATGAAGCAGAGGCCAGATCTCAACAAAGACTAGCTGCTGCTGAAGCTGAGATAGCAGACATGAGGCAGAAATTGGAAGATTCTAAAAGGCAAATGTGTGATCTGTCTGATGTCTTGAAATCTAAGAACAAACAAAATGAGAACTATTTATCTGAAATAGAGAGTATTGGACAAGCATATGATGACATGCAAACTCAAAATCAACATCTGTTGCAGCAGATTACCGAAAGAGATGATTACAATATTAAGCTTGTATTGGAGGGTGTGAGGGCAAGACAGAAGCAAGATTCTCTGCTCATAGAAAAGCGTGTAATTGAACAAGAGATCCAGCAAGCAAACATATCCCTGAATTTATATGATATGAAAGCTTTAAGAATTGAAGACCAGTTGAAGTTTTGTTCAGATCAGTTTCAAAGACTTGCAGAGGATAAACTTCAAAGTTCTGTCACTTTGGAAAATACACAAAGAAGGCTGTCTGATGTTAGAAGACAATCTCAACAGGTTAGGGATACAGTGGTGGAATTGCAATCTAAAATTGGTAGTAATCGAGTGACACGTATGGAGTTACAAGTAGAACTTGAGAAAGAAAGGTTTGCCAAGAAGAGAGCAGAGGAGGATCTGGAGGTTGCTAGGAGAAAGTTCTCACACCTAAAAGAACAGAATGAGGGCTCTTCAATTACTGAAAAGCTTCAACAGGAACTTGAAGAGTACAGGGAAATTATCAAGTGCAGTATCTGCCAAGACAGGGCAAAAGAGGTGGTAATTACAAAATGCTACCACTTGTTCTGCTATTCATGTATCCAGAAAGTTGCTGGGAGTAGGCATCGCAAATGTCCACAGTGTGCTACTAGCTTTGGGGCTAATGATGTTAAGTCTGTTTATTTGTAA 2643 0.3958 MGSMGDSDRKRRHFSSLSPTPAAATTKKLPFLPVSEDKKLDIVVLQYQNQKLTQKLETQKLEYAALENRVSQLKERQKSYDSTLAVVRKSWEQLVNDLESCSECTRESSSKSNSRFSSTMEDGSPSTVQDVFLGRLMQTGATECASTCNYANQMEEQTEISTEKAKSVLKNIVISVNNLWVLMDGLRTALLKKLPGDVLCRQTLSSDLEVKVKNLRLEFSELHLKHKSLASEFQIQRDLDAKNKADLERLKGELASTVEELEESNHKLATLKAERDAAKGAVLPVLNVGSTHIPNDKIRDKQKDLQDMESTLKELLEQGSTRLIELKSLHEERIRILQQLCDLQNTLKNLKCITSSHAFQLVKDQMDKSKSEVLEYQALYEKLQVEKDNLVWREREWYIKNDLADIFQRSAAVSDFRVADIRTEIQKKIEERNMIENKLKEEAREPGRKQIIAEFKSLVSSFPEEMGSMQSQIRKYKESASDIHSLRADVQSVSSILDRKVKECDAFSVRSAGQLAEIKRLLGVLQDLRESEQDLKLILEMFRRESIDSRDVMEAREAEYRAWAHVQSLKSSLDEHTLELRVKTANEAEARSQQRLAAAEAEIADMRQKLEDSKRQMCDLSDVLKSKNKQNENYLSEIESIGQAYDDMQTQNQHLLQQITERDDYNIKLVLEGVRARQKQDSLLIEKRVIEQEIQQANISLNLYDMKALRIEDQLKFCSDQFQRLAEDKLQSSVTLENTQRRLSDVRRQSQQVRDTVVELQSKIGSNRVTRMELQVELEKERFAKKRAEEDLEVARRKFSHLKEQNEGSSITEKLQQELEEYREIIKCSICQDRAKEVVITKCYHLFCYSCIQKVAGSRHRKCPQCATSFGANDVKSVYL 880
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01110 880 Coils Coil 736 763 - -
Cca07g01110 880 Coils Coil 771 805 - -
Cca07g01110 880 Coils Coil 582 616 - -
Cca07g01110 880 MobiDBLite consensus disorder prediction 1 15 - -
Cca07g01110 880 Coils Coil 418 445 - -
Cca07g01110 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 868 - -
Cca07g01110 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Cca07g01110 880 Coils Coil 525 545 - -
Cca07g01110 880 Coils Coil 366 386 - -
Cca07g01110 880 Coils Coil 298 318 - -
Cca07g01110 880 CDD RING-HC_BRE1_like 826 867 - -
Cca07g01110 880 SMART ring_2 828 866 IPR001841 -
Cca07g01110 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Cca07g01110 880 Coils Coil 49 83 - -
Cca07g01110 880 PANTHER RING FINGER PROTEIN-RELATED 1 880 IPR013956 GO:0004842|GO:0010390
Cca07g01110 880 MobiDBLite consensus disorder prediction 1 22 - -
Cca07g01110 880 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1-LIKE 1 1 880 - -
Cca07g01110 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 809 880 IPR013083 -
Cca07g01110 880 SUPERFAMILY RING/U-box 820 878 - -
Cca07g01110 880 Coils Coil 244 281 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01110 Cca-Chr7 26796180 26819119 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01110 825 879 C3H Transcription Factor Family AT2G42030 35.714 5.40e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01110 K10696 - gmx:100790337 1511.89