Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01106 ATGAATCTGAGCTACGAACAGAGGCTTCAGGTTGCGGCCAAAATCATACTCGACGACGACGCACGCGCCGGCGATGCGCCGCCGTGCGAGGAAGAGCTTGGGCTCAGGGCGACCCTCAAGCCGCACCAGGTGGAAGGGGTTTCGTGGCTCATACGGAGGTACAAACTCGGCGTCAACGTTGTTCTCGGTGAGATGGGACTGGGCAAGACTTTGCAAGCTATCTCCTTTTTAAGCTATTTAAAAGTATGCCAGTTGTCAGTTGGGCCATTTTTGGTGATATGTCCTCTAAGTGTGACAGATGGTTGGGTGTCAGAGATAGTCAAATTTACCCCTAAACTAGAAGTCTTCAAATATGTTGGTGATAAAGAATACAGGCGTAATCTACGCATGAAAATTCATGAACGTGTAACAGGGCAGTCATCAACGCTGAACCTATTGTTGCCTTTTGATGTGCTGTTAACATCATATGACATTGCACTGATGGATCAGGATTTTCTTTCTCAAATACCATGGCAGTATGTAATCATTGACGAAGCTCAGAGACTTAAAAACCCGTCAAGCGTTTTATTTAATGTTCTCAAAGATCGCTATGTAATGCCAAGACGGTTGTTGATGACTGGCACGCCTATTCAAAACAACCTTTCTGAACTGTGGGCGTTGATGTATTTTTGCATGCCTTCTGTCTTTGGTACACTGGATCAGTTCCTTTCTACGTTTAAGGGCATCAGTGATCTTTCATCAGTTCATGATGCTTCAAAGGTAAAGGAGAGACTTAAAATTCTGAGAAGTGTATTGGCAGCCTTTATGCTCCGACGTACCAAGTCAAAGCTTATTGAGTGTGGAAATTTAGTGCTGCCTCCTCTCACTGAGACAACTGTGTTAGTACCCCTTGTCATCCTGCAGAAGAAGGTCTACATGTCAATATTGAGAAAGGAACTTCATAAGCTTCTTGCATTATCTTCTGGAACTTCAAATTATCAGTCACTACAAAACATTGTGTTACAACTAAGAAAAGCATGCAGCCATCCTTACCTCTTTCCAGGTATTGAGCCTGAACCTTATGAAGAAGGTGAACATCTGGTTCAGGCCAGTGGTAAATTGCTTATTCTGGACCAACTTCTTCAGAAGTTACATTATACTGGACATCGTGTTCTTCTTTTTGCTCAGATGACCCATACACTTGACATTTTGCAAGATTTTCTGGAGATGCGAAATTATTCATATGAGCGTCTTGATGGATCAATTAGGGCTGAGGAGCGCTTTGCTGCTATAAGAAGTTTCAGCAGCTCATCAGCTAATATGGGCCTGAATTCTGAAGATGACCAAAATGGAGCATTTGTTTTTATGATCTCTACAAGAGCAGGGGGAGTTGGTTTGAATCTTGTGGCTGCTGATACTGTTATATTCTACGAGCAAGATTGGAACCCTCAGGTGGACAAGCAAGCTTTGCAGAGAGCACATAGAATTGGCCAGATGAACCATGTGTTGTGTATAAACCTTGTTACAGAGCAGTCAGTGGAGGAAGTAATTATGCGGAGAGCAGAGAGAAAATTGCTGCTGAGCATCAATGTTACAGGTGATAACATTCTCAAAGATGACAATAAAGAACTGTCTGAAGTTGGAACTGGTGATTTGAAATCCATCATATTTGGGTTACATATGTTTGATCCCATTGAGATCAATGATGGGAATCATAAGGATATGAACATACAAGAAATTAGTGCTATGGCTGACAGGGTGCTTGCTATGCGTGATGAACAAATACTTGATAAGGATGAAAGGAAATTTGAGGTCAATCCAAGAAACATTTTAAAAGGGGATGATGTCAAGGAAGGAGTTTCTGCTTCTCTCTCTTGTGATCTTGGCCTTGACGAGGCTTCATATCTATCTTGGGTTAAAAAATTTGAGGAAGTGGCTAAATCAAGTTGTGACTCAATCATGGACTTGAGAAGCAGAAGAAACTTAGATGAGGAAAAGAGTCTAAAACTTGAGTCTGCGAGGAAGAAGGCAGAGGAAAAGAAGCTATCTAGGTGGGAAGCTCTTGGATATCAATCATTGAATGTAAAAGAAGCTATCAGCCCAACAGACAATGACATAACATCAGCTACTGGGTCTGTTCATTTTGTGTATGGAGATTGTACAGCTCCATCAAATGTTTGTTCATCTGATCCTGCTATAATTTTCAGCTGCGTTGATACATCCGGACATTGGGGCCGCGGTGGAATGTTTGATGCATTGTCCAACCTTTCTACGAGCATTGGTGATGCATATGAACGGGCTTCTGAACATGGGGACCTGCATCTTGGTGATCTACATCTTATAAGGCTTGATGATGGTTGTGATGAACAAAATATGGATGGAAATGTTCCCAAAATGGTTGCTTTAGCTGTGGTTCAGTTTTATAATCCAAGGCGCAAAATCCCTCGCGGTGAAATCTCAGTTCCCCACTTGGAAAGCTGCTTATCAAAGGCAGCGTTCTCAGCAGCCCAGAATTCTGCATCAATACATATGCCACGAATTGGTTATCAAGATGGATCTGATCGTTCTGAGTGGTACACCATAGAACGGCTACTGAGAAAATATGCTTCCATTTACAACATAAATATATACGTATATTATTATCGAAGATCACGTTAA 2637 0.4198 MNLSYEQRLQVAAKIILDDDARAGDAPPCEEELGLRATLKPHQVEGVSWLIRRYKLGVNVVLGEMGLGKTLQAISFLSYLKVCQLSVGPFLVICPLSVTDGWVSEIVKFTPKLEVFKYVGDKEYRRNLRMKIHERVTGQSSTLNLLLPFDVLLTSYDIALMDQDFLSQIPWQYVIIDEAQRLKNPSSVLFNVLKDRYVMPRRLLMTGTPIQNNLSELWALMYFCMPSVFGTLDQFLSTFKGISDLSSVHDASKVKERLKILRSVLAAFMLRRTKSKLIECGNLVLPPLTETTVLVPLVILQKKVYMSILRKELHKLLALSSGTSNYQSLQNIVLQLRKACSHPYLFPGIEPEPYEEGEHLVQASGKLLILDQLLQKLHYTGHRVLLFAQMTHTLDILQDFLEMRNYSYERLDGSIRAEERFAAIRSFSSSSANMGLNSEDDQNGAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQMNHVLCINLVTEQSVEEVIMRRAERKLLLSINVTGDNILKDDNKELSEVGTGDLKSIIFGLHMFDPIEINDGNHKDMNIQEISAMADRVLAMRDEQILDKDERKFEVNPRNILKGDDVKEGVSASLSCDLGLDEASYLSWVKKFEEVAKSSCDSIMDLRSRRNLDEEKSLKLESARKKAEEKKLSRWEALGYQSLNVKEAISPTDNDITSATGSVHFVYGDCTAPSNVCSSDPAIIFSCVDTSGHWGRGGMFDALSNLSTSIGDAYERASEHGDLHLGDLHLIRLDDGCDEQNMDGNVPKMVALAVVQFYNPRRKIPRGEISVPHLESCLSKAAFSAAQNSASIHMPRIGYQDGSDRSEWYTIERLLRKYASIYNINIYVYYYRRSR 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01106 878 Gene3D - 19 282 IPR038718 -
Cca07g01106 878 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 541 IPR001650 -
Cca07g01106 878 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 3 873 - -
Cca07g01106 878 SUPERFAMILY Macro domain-like 706 873 IPR043472 -
Cca07g01106 878 SMART helicmild6 395 490 IPR001650 -
Cca07g01106 878 Pfam SNF2-related domain 64 345 IPR000330 GO:0005524|GO:0140658
Cca07g01106 878 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 50 227 IPR014001 -
Cca07g01106 878 PANTHER HELICASE CHR10-RELATED 3 873 - -
Cca07g01106 878 Pfam Helicase conserved C-terminal domain 366 490 IPR001650 -
Cca07g01106 878 SMART ultradead3 35 235 IPR014001 -
Cca07g01106 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 530 IPR027417 -
Cca07g01106 878 Gene3D - 283 598 IPR027417 -
Cca07g01106 878 CDD Macro_Poa1p-like_SNF2 705 863 - -
Cca07g01106 878 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 32 272 IPR027417 -
Cca07g01106 878 CDD SF2_C_SNF 358 501 - -
Cca07g01106 878 Gene3D Leucine Aminopeptidase, subunit E, domain 1 705 878 IPR043472 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01106 Cca-Chr7 26601072 26642432 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01106 19 549 RAD5 or RAD16-like Gene Family AT1G02670 24.242 8.70e-28 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Cca07g01106 SNF2_N 1.8e-48 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01106 K20092 - gmx:100797182 1479.15