Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01097 ATGGCACGCGTTTCCCGCTCTTCAGCCCCGCGCCTCCTCTACGCCCTCTGCTCCTCCGCTTCGCTGTCGCCGGCGTCATCCCTCATCGGCGGCGCATTCCAGCTGCGACACATCTCCGGGGGGAACATGGCGCGCGCGAAGGCGGCGGCGGCGGACAAGGAGCCGTGGTGGAAGGATTCCATGGAGCGGCTTCGCAACATCGGGATCTCGGCGCACATCGACTCCGGGAAGACGACGCTGACGGAGCGGATTCTGTACTACACGGGTCGGATCCACGAGATCCACGAGGTGAGGGGCAGGGACGGCGTTGGCGCCAAGATGGATTCCATGGACTTGGAGAGGGAGAAGGGAATTACCATTCAGTCTGCTGCCACCTACTGCTCTTGGAAGGACTATAAGATTAACATTATTGACACACCTGGTCATGTTGATTTTACCATTGAGGTTGAGAGGGCTTTGCGTGTCCTTGATGGTGCCATTCTTGTTCTTTGTAGTGTTGGTGGGGTGCAAAGTCAGTCCATTACTGTTGATCGGCAAATGAGAAGATACGAGGTTCCAAGACTTGCATTTATCAACAAGCTTGATCGGATGGGAGCAGATCCATGGAAAGTGTTAAATCAGGCTAGATCTAAGCTTCGGCATCATAGTGCTGCAATTCAAGTTCCAATAGGCTTGGAAGATGATTTTAAAGGACTTGTTGATCTTGTGCAGTTAAAGGCCTACTATTTCCATGGTTCAAGTGGTGAAAACATTGTCACAGAAGAAGTGCCTGCAGATATGGAAGCCTTGGTGGCAGAAAAAAGACGTGAACTCATAGAAACCGTGTCAGAGGTTGATGATAAACTTGCTGAGGCTTTTCTTGGTGATGAAACCATATCAGCTGCTGATCTTGAGGAAGCAGTTCGTAGGGCTACCCTAGCACAGAAGTTTATACCAGTATTCATGGGTAGTGCTTTCAAAAATAAGGGGGTACAACCACTTCTGGATGGTGTAATTAGTTATTTGCCATGTCCAATTGAAGTTAGTAATTATGCACTTGACCAGACTAAGAATGAGGACAAGGTCGAGTTGCATGGAAGTCCTGATGGGCCACTTGTGGCATTGGCTTTCAAGTTGGAGGAAGGGCGGTTTGGTCAGTTAACATATCTAAGAATCTATGAGGGTGTGATTCGGAAGGGTGATTTTATTATTAATGTAAACACTGGCAAGAAGATCAAGGTTCCTCGATTGGTTAGGATGCATTCTGATGAGATGGAGGACATTCAAGAGGCTCATGCAGGGCAAATAGTTGCTGTATTTGGCGTTGATTGTGCATCAGGAGATACTTTTACTGATGGATCAGTTAGATACACAATGACTTCTATGAATGTTCCCGAACCAGTGATGTCATTAGCTGTACAACCGGTCTCTAAAGATTCTGGAGGGCAATTTTCAAAAGCTTTGAATCGTTTTCAAAAAGAGGATCCTACTTTTCGTGTTGGGTTGGACCCAGAGAGTGGGCAGACAATCATTTCTGGAATGGGGGAACTGCATTTAGATATCTATGTTGAACGCATTAGGAGAGAGTATAAGGTTGATGCTTCAGTTGGAAAGCCCCGTGTTAACTTTAGAGAAACTGTTACTCAACGTGCTGATTTTGACTATTTACATAAGAAGCAATCTGGAGGCCAAGGTCAATATGGACGGGTAATTGGGTATATTGAACCACTTCCTGCAGGGTCTCCAACTAAGTTTGAATTTGAAAACTTGCTTGTTGGTCAAGCTATTCCTTCAAATTTTATGCCTGCAATTGAGAAGGGTTTCAAAGAAGCTGCCAACTCTGGTGCCTTGATTGGACATCCAGTTGAAAATCTCCGAGTTGTCTTGACAGATGGTGCTGCCCATGCCGTTGATTCCAGTGAACTTGCATTTAAGATGGCTTCTATCTATGCTTTTAGACAGTGTTATGCAGCTTCCAGACCAGTTATATTAGAACCTGTTATGCTTGTTGAGCTGAAAGTACCAACAGAATTTCAGGGAGCTGTTGCTGGTGACCTCAACAAGAGAAAAGGTGTGATTGTTGGAAATGATCAAGAAGGAGACGATTCTGTCATTACTGCTCATGTTCCTCTTAACAATATGTTTGGGTACTCCACAGCTCTTCGATCAATGACACAGGGCAAAGGCGAATTCACTATGGAATATAAGGAACATTCACCAGTTTCTCATGATGTACAAACGCAATTGATAAACACGTACAAGGGCAACAAGGCAGCTGAATAA 2262 0.4571 MARVSRSSAPRLLYALCSSASLSPASSLIGGAFQLRHISGGNMARAKAAAADKEPWWKDSMERLRNIGISAHIDSGKTTLTERILYYTGRIHEIHEVRGRDGVGAKMDSMDLEREKGITIQSAATYCSWKDYKINIIDTPGHVDFTIEVERALRVLDGAILVLCSVGGVQSQSITVDRQMRRYEVPRLAFINKLDRMGADPWKVLNQARSKLRHHSAAIQVPIGLEDDFKGLVDLVQLKAYYFHGSSGENIVTEEVPADMEALVAEKRRELIETVSEVDDKLAEAFLGDETISAADLEEAVRRATLAQKFIPVFMGSAFKNKGVQPLLDGVISYLPCPIEVSNYALDQTKNEDKVELHGSPDGPLVALAFKLEEGRFGQLTYLRIYEGVIRKGDFIINVNTGKKIKVPRLVRMHSDEMEDIQEAHAGQIVAVFGVDCASGDTFTDGSVRYTMTSMNVPEPVMSLAVQPVSKDSGGQFSKALNRFQKEDPTFRVGLDPESGQTIISGMGELHLDIYVERIRREYKVDASVGKPRVNFRETVTQRADFDYLHKKQSGGQGQYGRVIGYIEPLPAGSPTKFEFENLLVGQAIPSNFMPAIEKGFKEAANSGALIGHPVENLRVVLTDGAAHAVDSSELAFKMASIYAFRQCYAASRPVILEPVMLVELKVPTEFQGAVAGDLNKRKGVIVGNDQEGDDSVITAHVPLNNMFGYSTALRSMTQGKGEFTMEYKEHSPVSHDVQTQLINTYKGNKAAE 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01097 753 Pfam Elongation factor G, domain IV 532 652 IPR005517 GO:0005525
Cca07g01097 753 SMART EFG_C_a 655 742 IPR000640 -
Cca07g01097 753 SMART EFG_IV_2 533 653 IPR005517 GO:0005525
Cca07g01097 753 Gene3D Elongation Factor G (Translational Gtpase), domain 3 464 537 - -
Cca07g01097 753 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 62 339 IPR000795 GO:0003924|GO:0005525
Cca07g01097 753 SUPERFAMILY EF-G C-terminal domain-like 455 532 IPR035647 -
Cca07g01097 753 Pfam Elongation factor G C-terminus 656 741 IPR000640 -
Cca07g01097 753 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 1 753 IPR045044 -
Cca07g01097 753 Pfam Elongation Factor G, domain III 457 531 IPR041095 -
Cca07g01097 753 Pfam Elongation factor Tu domain 2 378 444 IPR004161 GO:0005525
Cca07g01097 753 Pfam Elongation factor Tu GTP binding domain 63 336 IPR000795 GO:0003924|GO:0005525
Cca07g01097 753 Gene3D - 52 341 IPR027417 -
Cca07g01097 753 TIGRFAM small_GTP: small GTP-binding protein domain 64 236 IPR005225 GO:0005525
Cca07g01097 753 Gene3D Translation factors 346 463 - -
Cca07g01097 753 Hamap Elongation factor G [fusA]. 60 746 IPR004540 GO:0003746|GO:0005525|GO:0006414
Cca07g01097 753 CDD EFG_III 458 533 IPR009022 -
Cca07g01097 753 CDD EF-G 66 338 - -
Cca07g01097 753 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 61 336 IPR027417 -
Cca07g01097 753 SUPERFAMILY EF-G C-terminal domain-like 655 747 IPR035647 -
Cca07g01097 753 SUPERFAMILY Translation proteins 303 455 IPR009000 -
Cca07g01097 753 PANTHER ELONGATION FACTOR G, MITOCHONDRIAL 1 753 - -
Cca07g01097 753 SUPERFAMILY Ribosomal protein S5 domain 2-like 532 654 IPR020568 -
Cca07g01097 753 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 108 123 IPR031157 -
Cca07g01097 753 PRINTS GTP-binding elongation factor signature 66 79 IPR000795 GO:0003924|GO:0005525
Cca07g01097 753 PRINTS GTP-binding elongation factor signature 115 123 IPR000795 GO:0003924|GO:0005525
Cca07g01097 753 PRINTS GTP-binding elongation factor signature 135 145 IPR000795 GO:0003924|GO:0005525
Cca07g01097 753 PRINTS GTP-binding elongation factor signature 151 162 IPR000795 GO:0003924|GO:0005525
Cca07g01097 753 PRINTS GTP-binding elongation factor signature 187 196 IPR000795 GO:0003924|GO:0005525
Cca07g01097 753 Gene3D - 538 743 IPR014721 -
Cca07g01097 753 CDD mtEFG1_C 658 735 IPR035649 -
Cca07g01097 753 Gene3D - 659 729 - -
Cca07g01097 753 TIGRFAM EF-G: translation elongation factor G 60 747 IPR004540 GO:0003746|GO:0005525|GO:0006414
Cca07g01097 753 CDD EFG_mtEFG1_IV 536 651 IPR005517 GO:0005525
Cca07g01097 753 CDD mtEFG1_II_like 365 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01097 Cca-Chr7 26062854 26085103 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01097 59 722 Eukaryotic Initiation Factors Gene Family AT1G56070 23.975 5.48e-35 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01097 K02355 - gmx:100783315 1406.35