Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01096 ATGGACTTCCCAGGGAACATGTTCTGTCTCGGAAACCGAGACCTTAATAACGGTAACGCCTTCGCTTGGGACTCATGGGAAGCCACCACTAATGATaataacaacaataccaacaacaacaacaacGGTTCGAGGCTTCTCAACGCCTTCCACGGGGAGGGATCCGCTGCGGGGCTGGCCAACGCGCTCATGTTCCTGCCGCAAAACGGCGGCGTTTTGCGTCAGCGGCAGCATGCGTACGGAGGGGAGGGGTCTTCTcactcgcactcgcactcgcactcgcacGTGCACTCCGACCCGCACCTCACGTGCTTGAAGCTCGGGAAGAGGCATTACTTTGAggacgcgaacgcgagcggaggcggaagcggaggcgTGGCGCCTGGGTTGGCGTTGGGGGATAAGAGGGGGAAGGGGTGCTCTGCTGGCGCCGCCGCCGCCAAGGCGGTGGGGTTCACGGCGGCggcggcgacggtgccgaggtgtcaggtggaggggtgccacgtggcgCTCTTGAACGCGAAGGACTACCACAGGAGGCACAAGGTGTGTGAGATGCATTCCAAGGCTCCCAGAGTTGTGGTGTTAGGGATGGAGCAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCACGTGGTGTCAGAGTTCGATGATTCAAAGAGGAGTTGTAGGAGAAGACTAGCAGGTCACAACGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGCAAGGAATTCTTCACAAGGAGGGTGTGCTCTCTCTCTTCTGTCATCTAGAAGTGATTCATGGCTTTCTCCTTCTGACCTCTCCACAAGATGCAGTGCGGCGTTGCGCGAATTGATCGCAGAAAACCGGGCAGCAATCATGGCCAGGCAGTTTGTTTCAGATAGAGATTGGCATTTTCACCACCATGCAGCGGAAGAGTTCAAGGAGATCCAACCTGAGTCCAATTACCTCCCACAACAGATGTTTCCGCAGACACAGTGA 984 0.4746 MDFPGNMFCLGNRDLNNGNAFAWDSWEATTNDNNNNTNNNNNGSRLLNAFHGEGSAAGLANALMFLPQNGGVLRQRQHAYGGEGSSHSHSHSHSHVHSDPHLTCLKLGKRHYFEDANASGGGSGGVAPGLALGDKRGKGCSAGAAAAKAVGFTAAAATVPRCQVEGCHVALLNAKDYHRRHKVCEMHSKAPRVVVLGMEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQGGCALSLLSSRSDSWLSPSDLSTRCSAALRELIAENRAAIMARQFVSDRDWHFHHHAAEEFKEIQPESNYLPQQMFPQTQ 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01096 327 Gene3D - 153 223 IPR036893 GO:0003677|GO:0005634
Cca07g01096 327 ProSiteProfiles Zinc finger SBP-type profile. 159 236 IPR004333 GO:0003677
Cca07g01096 327 Pfam SBP domain 162 235 IPR004333 GO:0003677
Cca07g01096 327 MobiDBLite consensus disorder prediction 79 99 - -
Cca07g01096 327 SUPERFAMILY SBT domain 160 241 IPR036893 GO:0003677|GO:0005634
Cca07g01096 327 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 40 327 IPR044817 GO:0003677
Cca07g01096 327 MobiDBLite consensus disorder prediction 226 247 - -
Cca07g01096 327 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 40 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01096 Cca-Chr7 25792512 25801572 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01096 104 235 SBP-box Gene Family AT1G27370 49.635 5.87e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Cca07g01096 SBP 1.8e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01096 - - gmx:100806582 443.351