Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01085 ATGAGCCAGTGTGTTCCAAGCTGGGATGTCGACGACAACCCACCACCCCCAAGACTCTCTCTTCGCTCCAACTCCAATTCCACTGCCCCTGATGTTCCCATGTTAGACTACGAAGTTGCGGAACTGACATGGGAAAATGGACAACTTTCTATGCATGGGTTAGGGCTACCGCGTGTGCCTGTAAAACCCCCAACAAGCGCCGCGAATAAGTACACGTGGGAGAAGCCTCGCGCGAGTGGCACCTTGGAGTCCATAGTGAACCAAGCCACGAGCCTGCCGCAGCGCGGGAAGCCGTCGCTGAAcggtgacggcgtcggcgtctgcgggggcttcgTGGTGCCGTGGTTCGACCCCCACGCGCACGGCGGCGGAGGCGGCGCCACCGCGAACACGGTGGGGATGGACGCACTGGTGCCGTGCTCGAAGCGGGAGGCGCGGAAGCAGGGCGTGGAGTCGGTCCCAGGCGGCACGTGCATGGTGGGGTGCTCCACACGTGTGGGGTCTTGCTGCGGTAACCAGGGGGCGAAGGGGCACGAGATGAGTGGGAGGGATCAGAGCGTGAGTGGCAGTGCCACGTTTGGGAGGGATAGCAAGCACGTGACCCTTGACACGTGCGACAGGGAGTTCGGTGTGGCTTTCACTTCCACCTCTATTAACTCTCTCGATAACACCAGCTCCGCTAAGCACTGCACCAAGACCACGACCGTTGACGACCACGATTCCGTTTCCCACAGTAAACCAGTGGGTGAAGATGGGGATAAGGAGAAGAAAAAGAGAGCGAACGGAAAATCGTCGGTGTCCACTAAAAGGAGCAGGGCTGCGGCTATACACAACCAATCTGAAAGGAAAAGGAGGGATAAGATAAACCAAAGAATGAAGACATTGCAAAAGTTGGTCCCAAATTCCAGCAAGACTGACAAGGCTTCAATGTTGGATGAGGTGATAGAATATTTGAAGCAGTTGCAAGCACAAGTGCAGATGATGAATAGAATCAACATGTCATCGATGATGCTGCCATTGACCATGCAACAACAGCTTCAAATGTCGATGATGTCTCCAatgggcatgggattagggatgggaatggggatggggatgggaatgggcatggACATGAACTCCATGAACCGTGCTAACATCCCTGGCATCCCTCCGGTTCTCCACCCTTCTGCCTTCATGCCCATGGCGGCCTCCTGGGATGCCGCTGCCGTTGCCGTCGGCGGCAGTGACAGACTTCAAGGAACTCCGGCCACCGTGATGCCTGACCCTTTGTCCACATTTTTTGGGTGCCAATCACAGCCCATGAACATGGATGCCTACAGTAGACTTGCTGCAATGTATCAGCAGCTGCATCAACCTCCAGCTTCTGGTTCCAAGAACTGA 1383 0.5199 MSQCVPSWDVDDNPPPPRLSLRSNSNSTAPDVPMLDYEVAELTWENGQLSMHGLGLPRVPVKPPTSAANKYTWEKPRASGTLESIVNQATSLPQRGKPSLNGDGVGVCGGFVVPWFDPHAHGGGGGATANTVGMDALVPCSKREARKQGVESVPGGTCMVGCSTRVGSCCGNQGAKGHEMSGRDQSVSGSATFGRDSKHVTLDTCDREFGVAFTSTSINSLDNTSSAKHCTKTTTVDDHDSVSHSKPVGEDGDKEKKKRANGKSSVSTKRSRAAAIHNQSERKRRDKINQRMKTLQKLVPNSSKTDKASMLDEVIEYLKQLQAQVQMMNRINMSSMMLPLTMQQQLQMSMMSPMGMGLGMGMGMGMGMGMDMNSMNRANIPGIPPVLHPSAFMPMAASWDAAAVAVGGSDRLQGTPATVMPDPLSTFFGCQSQPMNMDAYSRLAAMYQQLHQPPASGSKN 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01085 460 CDD bHLH_AtPIF_like 272 333 - -
Cca07g01085 460 Coils Coil 278 298 - -
Cca07g01085 460 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 1 460 IPR031066 -
Cca07g01085 460 SMART finulus 278 327 IPR011598 GO:0046983
Cca07g01085 460 MobiDBLite consensus disorder prediction 232 262 - -
Cca07g01085 460 Gene3D - 267 333 IPR036638 GO:0046983
Cca07g01085 460 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 272 321 IPR011598 GO:0046983
Cca07g01085 460 PANTHER TRANSCRIPTION FACTOR UNE10 1 460 - -
Cca07g01085 460 MobiDBLite consensus disorder prediction 1 31 - -
Cca07g01085 460 MobiDBLite consensus disorder prediction 174 193 - -
Cca07g01085 460 MobiDBLite consensus disorder prediction 231 288 - -
Cca07g01085 460 Pfam Helix-loop-helix DNA-binding domain 277 322 IPR011598 GO:0046983
Cca07g01085 460 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 270 334 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01085 Cca-Chr7 25217361 25223718 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01085 1 441 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G00050 51.007 8.44e-103 310
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca07g01085 HLH 7e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01085 - - gmx:100798775 709.138