Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01081 ATGAAATTTTCTTTCAGAGTTGAATGCAACTATCCCGGTAGGTCAATAGCTTTCCACGTGGACTCTGGCTCAAACCAAGAATATTTTGCTACATTGGTTGAATATGAGGATGGGGATGGTGATCTTTCAAAGGTTGAAATAAAGGAAGCACTTGATTCAGGGTCATGGGACATCATGCAACAATCATGGGGTGCAGTGTGGAAAATTGACAAAGGCTCACCACTGAGATCACCATTTTCCATCAGGCTAACCACCCTTGAGTCCGGCAAGACTATTGTGGCCAATAATGTGATCCCTGCTGGGTGGACTCCTGGTCAGACTTATAGATCAGTTGTGAATTTTGAAACCTAA 351 0.433 MKFSFRVECNYPGRSIAFHVDSGSNQEYFATLVEYEDGDGDLSKVEIKEALDSGSWDIMQQSWGAVWKIDKGSPLRSPFSIRLTTLESGKTIVANNVIPAGWTPGQTYRSVVNFET 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01081 116 Pfam Expansin C-terminal domain 16 99 IPR007117 -
Cca07g01081 116 Gene3D - 11 115 IPR036749 -
Cca07g01081 116 SUPERFAMILY PHL pollen allergen 14 110 IPR036749 -
Cca07g01081 116 PANTHER EXPANSIN-B3 6 115 - -
Cca07g01081 116 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 27 110 IPR007117 -
Cca07g01081 116 PANTHER EXPANSIN-B2-RELATED 6 115 - -
Cca07g01081 116 PRINTS Major pollen allergen Lol pI signature 18 33 IPR005795 GO:0005576|GO:0019953
Cca07g01081 116 PRINTS Major pollen allergen Lol pI signature 34 49 IPR005795 GO:0005576|GO:0019953
Cca07g01081 116 PRINTS Major pollen allergen Lol pI signature 65 82 IPR005795 GO:0005576|GO:0019953
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01081 Cca-Chr7 24923053 24923403 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01081 6 114 Expansin Gene Family AT1G65680 60.550 4.78e-47 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01081 - - ccaj:109793473 241.891