Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01080 ATGGACAAACACAAATGCAAGCTCTGCTTCCGAAGCTTCTCCAATGGGAGAGCCTTGGGCGGCCACATGCGCTCTCACATGATGAACCTTCCTCTCTCCAAGCCCGAAGAAGCCTTCTCCCGCACCATCCAACTCAGCTTCGAAGCTGAGTCGGCTTCGtcatcgtcatcatccgatgatgatcatggtcacacgcatccgcatgaccatgatcatcaggatgaCGACGATGACAAGGCTTTGTGCTACGGGCTCAGAGAGAATCCCAAGAGAAGCATCCGCCTGGTGGATCCCGAATTTTCCTTCGCAGCCGCGGACACGGGCTCGGTGATCCTCCAAGATAGAGAGAGCGAGACGGAGTCGTCGAAAAACAACCCCACAAGGAGAAGATCCAAAAGGCCATGGaacaacaacaacaacaactattataactacaacaaTGAGAGGAACAAGAAGCAGGTCGTGGGGGAGAAGAGTAAGACAGAATCGTGGGTGGAGCAAGAGCCAGCGAGTTCGGTGTCGGACGCGACGACCGAGGAGGACGTGGCGTATTGTCTGATGATGCTGTCGAGGGACAAATggaagaggcagaaggaggaggcgcaggtggaggaagcggaggagcagtacgaggaggaggaggaggaagaggagagcgaggaggaggaagaggacgaggcgttcgaggagagcgaggagtcgcaggagacgatgaaagtgtgcaagaaccgaggaggaggaggaggaggaAGGTACAAATGCGAGACGTGCAACAAGGTGTTTCGATCCTACCAAGCATTGGGGGGCCACAGGGCGAGCCACAAGAAGATGAAAGTGAACGTGAAAGTGGACGAGGGCGAACACAACAAAAGTGGACCCTGCGTTGCTGAAAAGAAAATCCACGAGTGCCCCGTTTGCTTCAGAGTCTTCGCTTCGGGTCAAGCGCTTGGGGGACACAAGAGAACGCATATCTCAACCTCCCTGCCCCCATTGACGATGACGACGCCAGCCAAATCGAAAACTCCGCGGTTTCCGATGCAGAATTCGTCAAAACCCGTTAGTGCAGAAGAATTGGGAAGCATGCGTGTTATAGTGGGCTCTGTTTCAGCTTCCAAGCAAATACAAAGTAACTGTTTTCTACCGTTCATTGGTGATGAATCCTAA 1164 0.4081 MDKHKCKLCFRSFSNGRALGGHMRSHMMNLPLSKPEEAFSRTIQLSFEAESASSSSSSDDDHGHTHPHDHDHQDDDDDKALCYGLRENPKRSIRLVDPEFSFAAADTGSVILQDRESETESSKNNPTRRRSKRPWNNNNNNYYNYNNERNKKQVVGEKSKTESWVEQEPASSVSDATTEEDVAYCLMMLSRDKWKRQKEEAQVEEAEEQYEEEEEEEESEEEEEDEAFEESEESQETMKVCKNRGGGGGGRYKCETCNKVFRSYQALGGHRASHKKMKVNVKVDEGEHNKSGPCVAEKKIHECPVCFRVFASGQALGGHKRTHISTSLPPLTMTTPAKSKTPRFPMQNSSKPVSAEELGSMRVIVGSVSASKQIQSNCFLPFIGDES 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01080 387 MobiDBLite consensus disorder prediction 55 80 - -
Cca07g01080 387 MobiDBLite consensus disorder prediction 199 248 - -
Cca07g01080 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 301 323 IPR013087 -
Cca07g01080 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 252 279 IPR013087 -
Cca07g01080 387 MobiDBLite consensus disorder prediction 111 176 - -
Cca07g01080 387 MobiDBLite consensus disorder prediction 47 80 - -
Cca07g01080 387 ProSitePatterns Zinc finger C2H2 type domain signature. 6 26 IPR013087 -
Cca07g01080 387 Gene3D Classic Zinc Finger 250 323 - -
Cca07g01080 387 SMART c2h2final6 301 323 IPR013087 -
Cca07g01080 387 SMART c2h2final6 252 274 IPR013087 -
Cca07g01080 387 SMART c2h2final6 4 26 IPR013087 -
Cca07g01080 387 PANTHER CYS2/HIS2 ZINC-FINGER TRANSCRIPTION FACTOR 1 328 - -
Cca07g01080 387 ProSitePatterns Zinc finger C2H2 type domain signature. 254 274 IPR013087 -
Cca07g01080 387 SUPERFAMILY beta-beta-alpha zinc fingers 4 274 IPR036236 -
Cca07g01080 387 MobiDBLite consensus disorder prediction 131 150 - -
Cca07g01080 387 SUPERFAMILY beta-beta-alpha zinc fingers 297 325 IPR036236 -
Cca07g01080 387 Pfam C2H2-type zinc finger 301 323 - -
Cca07g01080 387 Pfam C2H2-type zinc finger 4 27 - -
Cca07g01080 387 Pfam C2H2-type zinc finger 251 276 - -
Cca07g01080 387 Coils Coil 189 232 - -
Cca07g01080 387 MobiDBLite consensus disorder prediction 320 353 - -
Cca07g01080 387 ProSiteProfiles Zinc finger C2H2 type domain profile. 4 31 IPR013087 -
Cca07g01080 387 PANTHER ZINC FINGER PROTEIN ZAT1-RELATED 1 328 IPR044303 GO:0006355
Cca07g01080 387 ProSitePatterns Zinc finger C2H2 type domain signature. 303 323 IPR013087 -
Cca07g01080 387 MobiDBLite consensus disorder prediction 204 232 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01080 Cca-Chr7 24904813 24906332 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01080 1 323 C2H2 Transcription Factor Family AT3G60580 43.119 1.41e-58 190
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca07g01080 zf-C2H2_6 1.5e-11 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01080 - - vra:106780254 418.313