Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cca07g01067 | ATGAATTCTTCTTCCTCCGACCCATCTCAAACTCCATCGTTCGATCAATCATCATCACATTCACAGCCCCATAATGCCTATAATTATGAACACTACAACCAACCCCAATTCCAACAACACCCTCATTCTGCTGGACCCTCACACCTCCAGCCTGCGCCGGTTGCCGTTTCGCACAACCCTGTGGCAGTGGCAGTGGTAGCCGGGGCTCTCGCGCAGCTTGTTGGGAACGTTGATCGGGTGCCAATGGAACCGATTGGGCCATCTCAGTTCAGAGGTAGAGGTCACAGGGGTGGTAGACCATTTAGAGGCTTTGGGCGTGGTCGTTTCAGTCACCACCGTGGTAGGGGACGTGGAAGGGGTGGTGATGGTAGACAGTTTTCATCTCATTCTTCTGAATCCACCATTGCGAATAGTTCAGATGCGCCTGCTGCTGATGGAGTCACTTCAGTCTCTGGGCAATCATTTTTACATAATCCAGCACAAGTGCCATCTTCACCATTGCAGGCACCACAATGTAAGTTATGGTGTGAAATTTGTAAGGCCGAGTGTAATACTCCAGAAATAATGGAACAGCATAAGAATGGAAAGCGGCATAGGAAGAATTTGCTTGTGCATGAAGAAGTACAGAGACGCAAAGCTCTAAATGGACAACTGAGTGGAAATATTTCTACCTCTCAATCAAATTTAACAATCCAACCCGAGGAAGTTCAGGAATCTGAGAAGAAAGGATTACCAGAAGATAATATGGGTTCTGAAGCCACATCTGATAATCACAATAATGAAACTGAGCTTCAGAATAATGTTGCAGCAGGGGTGTCTGAAGAGCCTCAGCAGGAACCTAAAGCAGATGAGCCTGCCATACACGGTCATGGATTCAAGCGTAAGATGAGAGGAGGCAGAGGAGGTAAATACATGAGGATTGATGATGGGTCAAGAAAACCTTTGGAACCTCCAAAGCCTAAGCAGGTCACGTCTTTCATATGTGAGTTGTGCAATGTTAAATGTGATTCACAGGTTGTCTACAATAGTCATTTGATAGGGAAAAAACACTTGTCAAATTTCAAGCGTGTCTATGGTCACCAAGCTATGAATCGAGAAGCAGGGATCCAACCACACCCTCCTGTGATCAATACTCTATCAAATGCTAATAATTTTCCAGTCCAACAAGGTACTAGTGTTCCAACAGGTGTTAATGAATTTCTGGCTCAGTTCTTGATGAATGTGCTATCCAATATTCAAGTACCAGCAACGGCACCACTGTCAGGTCCTGCAGCTGCTCAGATACAAGTGCCAATATTGATGGCTGGATCAAGTCATGAACCGACCTCTCAAAATTCTTCACAGACACAAGTCTCAGATTCCTTAGCACATTTTAATAGTTCTACTGGGGAAACAAAAGTTAAGATGTCATCTGTTGCACTACAGCTGGATGAGACTGCATGTTCAAGTAATAACAAAGTTCAGATTTCATCTGTCGCTCTGCAGCTGGGTGTGACTGCAGGTTCAAGTAATAATGTTAACACTGAAACTGCAGATGGAGGACCTTCAAAGGAAGAAACGACAATTTCCCAGGATAGTTCAGTTATGACACCAGCAGAAAACCCAGTTGCAGCAAATAAACAAGTACCTTCATAA | 1635 | 0.4459 | MNSSSSDPSQTPSFDQSSSHSQPHNAYNYEHYNQPQFQQHPHSAGPSHLQPAPVAVSHNPVAVAVVAGALAQLVGNVDRVPMEPIGPSQFRGRGHRGGRPFRGFGRGRFSHHRGRGRGRGGDGRQFSSHSSESTIANSSDAPAADGVTSVSGQSFLHNPAQVPSSPLQAPQCKLWCEICKAECNTPEIMEQHKNGKRHRKNLLVHEEVQRRKALNGQLSGNISTSQSNLTIQPEEVQESEKKGLPEDNMGSEATSDNHNNETELQNNVAAGVSEEPQQEPKADEPAIHGHGFKRKMRGGRGGKYMRIDDGSRKPLEPPKPKQVTSFICELCNVKCDSQVVYNSHLIGKKHLSNFKRVYGHQAMNREAGIQPHPPVINTLSNANNFPVQQGTSVPTGVNEFLAQFLMNVLSNIQVPATAPLSGPAAAQIQVPILMAGSSHEPTSQNSSQTQVSDSLAHFNSSTGETKVKMSSVALQLDETACSSNNKVQISSVALQLGVTAGSSNNVNTETADGGPSKEETTISQDSSVMTPAENPVAANKQVPS | 544 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cca07g01067 | 544 | SMART | ZnF_U1_5 | 323 | 357 | IPR003604 | GO:0003676|GO:0008270 | |
| Cca07g01067 | 544 | SMART | ZnF_U1_5 | 171 | 205 | IPR003604 | GO:0003676|GO:0008270 | |
| Cca07g01067 | 544 | Gene3D | Classic Zinc Finger | 312 | 356 | - | - | |
| Cca07g01067 | 544 | Gene3D | Classic Zinc Finger | 159 | 205 | - | - | |
| Cca07g01067 | 544 | MobiDBLite | consensus disorder prediction | 95 | 118 | - | - | |
| Cca07g01067 | 544 | SUPERFAMILY | beta-beta-alpha zinc fingers | 311 | 358 | IPR036236 | - | |
| Cca07g01067 | 544 | Pfam | Zinc-finger of C2H2 type | 326 | 350 | - | - | |
| Cca07g01067 | 544 | Pfam | Zinc-finger of C2H2 type | 175 | 198 | - | - | |
| Cca07g01067 | 544 | PANTHER | GLUTENIN, HIGH MOLECULAR WEIGHT SUBUNIT 12-LIKE | 15 | 472 | - | - | |
| Cca07g01067 | 544 | MobiDBLite | consensus disorder prediction | 214 | 319 | - | - | |
| Cca07g01067 | 544 | MobiDBLite | consensus disorder prediction | 1 | 45 | - | - | |
| Cca07g01067 | 544 | SMART | c2h2final6 | 326 | 350 | IPR013087 | - | |
| Cca07g01067 | 544 | SMART | c2h2final6 | 174 | 198 | IPR013087 | - | |
| Cca07g01067 | 544 | MobiDBLite | consensus disorder prediction | 250 | 273 | - | - | |
| Cca07g01067 | 544 | SUPERFAMILY | beta-beta-alpha zinc fingers | 161 | 202 | IPR036236 | - | |
| Cca07g01067 | 544 | MobiDBLite | consensus disorder prediction | 301 | 316 | - | - | |
| Cca07g01067 | 544 | MobiDBLite | consensus disorder prediction | 502 | 534 | - | - | |
| Cca07g01067 | 544 | MobiDBLite | consensus disorder prediction | 214 | 234 | - | - | |
| Cca07g01067 | 544 | MobiDBLite | consensus disorder prediction | 85 | 147 | - | - | |
| Cca07g01067 | 544 | MobiDBLite | consensus disorder prediction | 502 | 544 | - | - | |
| Cca07g01067 | 544 | MobiDBLite | consensus disorder prediction | 1 | 53 | - | - | |
| Cca07g01067 | 544 | PANTHER | OS06G0651300 PROTEIN-RELATED | 15 | 472 | - | - | |
| Cca07g01067 | 544 | MobiDBLite | consensus disorder prediction | 277 | 291 | - | - | |
| Cca07g01067 | 544 | MobiDBLite | consensus disorder prediction | 124 | 147 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Cca07g01067 | Cca-Chr7 | 24118356 | 24124791 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Cca07g01067 | 176 | 350 | C2H2 Transcription Factor Family | AT5G61190 | 24.581 | 3.90e-06 | 48.1 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cca07g01067 | - | - | gmx:102666037 | 657.521 |