Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01066 atggcaaataaacccgtactcgtagCTAGGGTTAAAAGTGATGAGTTGAGACCCTACTCTCAAGCCCCGCAGCCACAGCCCGCAGTGCCGCACCAGCCCGCACGCACCACTCCATCTCAAATCAGTGTAATTCTTCGAGACTCTCATGGAATTGTTGAGGTGAAGAGTGTCACCCGAAGCAAGATTCTCTGTATATTGAAGGCTCATGGTATGGTTATAGCAAACTTGGGCCTTTGCATTTCCGTCTATGATATCAGATCCATTGATGGTGGATTTATCTTTGCTGGTGATGGGGCTCCAACCTTTACGGTTATAGCAAACTTGGGCCTTTGCATTTCCGTCTATGATATCAGATCCATTGATGGTGGATTTATCTTTGCTGGTGATGGGGCTCCAACCTTTACGGTTATAGCAAACTTGGGCCTTTGCATTTCCGTCTATGATATCAGATCCATTGATGGTGGATTTATCTTTGCTGGTGATGGGGCTCCAACCTTTACGGTATGA 507 0.4418 MANKPVLVARVKSDELRPYSQAPQPQPAVPHQPARTTPSQISVILRDSHGIVEVKSVTRSKILCILKAHGMVIANLGLCISVYDIRSIDGGFIFAGDGAPTFTVIANLGLCISVYDIRSIDGGFIFAGDGAPTFTVIANLGLCISVYDIRSIDGGFIFAGDGAPTFTV 168
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01066 168 PANTHER DNA-DIRECTED RNA POLYMERASE II, III 104 136 IPR045113 GO:0006352
Cca07g01066 168 PANTHER DNA-DIRECTED RNA POLYMERASE II, III 136 168 IPR045113 GO:0006352
Cca07g01066 168 Gene3D - 33 72 - -
Cca07g01066 168 Gene3D - 136 168 IPR036898 -
Cca07g01066 168 Gene3D - 101 135 IPR036898 -
Cca07g01066 168 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8 70 104 - -
Cca07g01066 168 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8 104 136 - -
Cca07g01066 168 PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC8 136 168 - -
Cca07g01066 168 PANTHER DNA-DIRECTED RNA POLYMERASE II, III 70 104 IPR045113 GO:0006352
Cca07g01066 168 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 67 104 IPR036898 -
Cca07g01066 168 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 104 136 IPR036898 -
Cca07g01066 168 SUPERFAMILY N-terminal, heterodimerisation domain of RBP7 (RpoE) 136 168 IPR036898 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01066 Cca-Chr7 23975092 23985016 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01066 37 71 Cytoplasmic Ribosomal Protein Gene Family AT3G60770 82.857 3.12e-11 56.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01066 K03022 K02953 gmx:100800770 71.2478