Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01051 ATGCATAGAATAATATCGACGCCGGCGTCGAAGTTCCGCCAGTTCCGGCGAATAAGGTCGAGAGCGAAGAGCGCGACAGCAGAGACAGCGACAGAGGAGGAACACGCGTTCCAGATCCTATGGCGGTACCAGATCCTGGACCCCGACAGCGACATCGTTGCGTATTGGAACAGGGTGTTCCTCGTGACGAGCCTTCTCGCCCTCTTCGTCGACCCTCTCTACTTCTTCCTCCCCACCGTCGGCGGCCCCGCCTGCCTCCACGCCGACCCCGGCCTCCGCATCGTCGTCACCATCCTCCGCACCTTCGCCGACCTCTTCTACGTCCTCCACATGATCATGAAGTTCCGCACCGCCTTCGTCGCCCCCAATTCTAGAATCTTCGGCCGCGGCGAGCTCGTCACCGACGCCCGCGAAATCGCCATGCGCTACCTCAAGTCTGATTTCGTCATCGACCTCGCTGCCACCATCCCTCTCCCTCAGATTGTCATTTGGCTTGTCATTCCCGCTAGCAGAAACGCCAGAACTGACCACGCCAACAACACTCTCGCCCTTTTCGTTCTTATTCAGTATGTTCCTAGGTTGTTTCTTATCTTTCCTTTGAACCGGCGCATTCAGAAAACCACCGGTGTTATCGCCAAGACTCCCTGGATTGGTGCCGCCTACAATCTTGTTCTCTACCTTCTCGCTAGCCACGTTACAGGCGCAACTTGGTATCTCTCCTCGATTGGGAGACAATTTAACTGCTGGAAAACACAGTGCCAACAGGAGAACAGATCGCATACCCTCTCTTGCTTTTCTAGCTATCTTGATTGCAATAGCGTGGACCTCCCTGATCGGCAATACTGGCTGAACATCACGCGTGTAATTAGCAGATGTGACGCAAAGACCAAGATTAACGTCAAGTATAAGTTTGGGATGTTCGCTGAGGCTTTTCTCAATGATGTTGTCAGTTCCAGTTTTAAGGAAAGATATTTCTATTGCTTTTGGTGGGGTTTGAGAAATCTAAGCTCGTACGGACAGAATTTGGATACCACCACGTATCTTCCGGAGACGTTCTTTTGCATCATCTTGTGCATTGCTGGATTGGTTCTCTTTTCACTTTTGATTGGAAACATGCAGACGTACTTGCAATCGATGACAGTTAGGCTCGAAGAATGGAGGATTCGGAAAAGAGATACCGAGGAGTGGATGAGGCATCGCCAGTTACCGCCAGATTTGCAGGAACGTGTCCGTCGTTTTGTTCAATATAAATGGCTTGCAACAAGGGGAGTTAACGAAGAAGCCATACTCAAAGCGTTACCTTTGGATCTTCGTCGAGAAATTCAACATCACTTGTGTCTTTCTCTTGTGCGGCGTGTCCCATTCTTCTCGCAAATGGACGATCAACTCCTTGATGCAATTTGTGAACGGCTTGCGTCATCATTAAGCACGGAAGGCACGTACATATTTCGAGAGGGTGATCCAGTGGATGAAATGTTGTTCATCATTAGAGGGCAATTGGAGAGTTCCACAACGAATGGAGGAAGGTCTGGATTCTTCAATTGCATCACACTCCGGCCTGGTGACTTTTGTGGAGAGGAATTGCTGACATGGGCCTTAATGCCAAACTCAACCCTCAACCTACCTTCTTCTACGCGCACTGTCAAAGCTCTTTCTGAAGTTGAAGCTTTTGCACTACAGGCAGAGGATCTCAAGTTTGTGGCAAGTCAGTTCAAGCGCCTTCACAGCAAGAAACTTCAGCATGCGTTTAGGTACTATTCCCATCAATGGAGGACATGGGGTGCTTGCTTCATACAAGCAGCTTGGAGAAGGCTTCAGAAAAGAAAGGCAACGAGGGAGTTATCCCTCAAAGAGCGTCTCTACTACATGGGGCTGCCTGAGGCTGAAATGGATGGAAGTGGAAATTTTGAGGATGAGATCGAGGAGTCCTCTGGGAATGTGAAAAGGGTTCAGAATCTAGGCGCAACAGTTTTGGCCTCAAAGTTTGCTGCCAATACAAGGAAAGGGAACCACCATAAGCTACAAGGCAGTGATCCTGTGCCCCAATTGTTCAAGCCAGATGAACCTGATTTTTCTGCAGTTTAG 2085 0.4964 MHRIISTPASKFRQFRRIRSRAKSATAETATEEEHAFQILWRYQILDPDSDIVAYWNRVFLVTSLLALFVDPLYFFLPTVGGPACLHADPGLRIVVTILRTFADLFYVLHMIMKFRTAFVAPNSRIFGRGELVTDAREIAMRYLKSDFVIDLAATIPLPQIVIWLVIPASRNARTDHANNTLALFVLIQYVPRLFLIFPLNRRIQKTTGVIAKTPWIGAAYNLVLYLLASHVTGATWYLSSIGRQFNCWKTQCQQENRSHTLSCFSSYLDCNSVDLPDRQYWLNITRVISRCDAKTKINVKYKFGMFAEAFLNDVVSSSFKERYFYCFWWGLRNLSSYGQNLDTTTYLPETFFCIILCIAGLVLFSLLIGNMQTYLQSMTVRLEEWRIRKRDTEEWMRHRQLPPDLQERVRRFVQYKWLATRGVNEEAILKALPLDLRREIQHHLCLSLVRRVPFFSQMDDQLLDAICERLASSLSTEGTYIFREGDPVDEMLFIIRGQLESSTTNGGRSGFFNCITLRPGDFCGEELLTWALMPNSTLNLPSSTRTVKALSEVEAFALQAEDLKFVASQFKRLHSKKLQHAFRYYSHQWRTWGACFIQAAWRRLQKRKATRELSLKERLYYMGLPEAEMDGSGNFEDEIEESSGNVKRVQNLGATVLASKFAANTRKGNHHKLQGSDPVPQLFKPDEPDFSAV 694
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01051 694 Gene3D Helix hairpin bin 383 446 - -
Cca07g01051 694 SUPERFAMILY Voltage-gated potassium channels 47 377 - -
Cca07g01051 694 Gene3D Jelly Rolls 453 573 IPR014710 -
Cca07g01051 694 CDD CAP_ED 455 586 IPR000595 -
Cca07g01051 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 33 693 - -
Cca07g01051 694 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 18 33 693 - -
Cca07g01051 694 SMART cnmp_10 455 586 IPR000595 -
Cca07g01051 694 ProSiteProfiles cAMP/cGMP binding motif profile. 455 585 IPR000595 -
Cca07g01051 694 Pfam Ion transport protein 55 382 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cca07g01051 694 Pfam Cyclic nucleotide-binding domain 478 566 IPR000595 -
Cca07g01051 694 SUPERFAMILY cAMP-binding domain-like 385 580 IPR018490 -
Cca07g01051 694 Gene3D - 62 380 - -
Cca07g01051 694 MobiDBLite consensus disorder prediction 666 694 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01051 Cca-Chr7 23080228 23083410 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01051 22 692 Ion Channels AT5G14870 67.971 0.0 985
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01051 K05391 - gmx:100802812 1264.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01051 07 23080228 23083410 Cca07g01051 07 23080228 23083410 ECH