Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01050 ATGAACCAACCTGTGGCATTTGCAGGAAACACTGCAGGTCCATTGCCAAAACAGGAATGCAGAGATATGTTTGCCTATAGAGGGTGCAAGTTTTGCTTGAAAGTCTTTGACAGCCCTAACTCTCGCAGGATCCACCAAGAAAAATGCCAGCACTCTGGAAATGCTGGAATAATTGGTCGCTTTTCAAACTTGGGACTTCGTGATAATTTGGCTATTGGTGGTGGAGCAAGAGGACCACAAGTAGTTGCACTAGCATGTAAAATGGTTGGAGGTGGCAGTGATGGCTCACTGGACCTGTGTGGAAGAGTGTGCTTAATCGATGAGCAAGAGAACATAATCTTCCATTCTTATGTGAAGCCACCAATTCCTGTCACAAACTACAGGTATGAGACAACAGGAATCAGGCCAGAATACCTGAGAGATGCAATGCCAATGAGACAAGTTCAGAGGAGGATTCAAGATTTCCTTTGCAATGGTGAACCTATGTGGACAATTCGGCCAAGAGGTGGAAGAGCAAGGATTCTTGTGGGTCATGGTTTGGATCATGACCTTGAATGTTTGCAAATAGAATATCGAGCCGAAAAAATAAGGGACACTGCAAAATACCCTCCACTGATGAAAACTAGCAAGCTGAGCAACTCACTCAAGTACTTGACACAGGCATATCTTGGGCAAGACCCTTATGAGGATTGTGTTGCAACGATGAGGCTCTACATGAGAATGAGATCCCAAGTGCATAAAATACAGGATTACCCTTTGGCTTCTGACCCACAGAACAGGAATAATTTTGCTTCGTGGAGGCAAAGTGAGCTTGAAAGAATGACTCCTGAACAAATGCTAGAAATATCAAGGTCTGATTACTACTGCTGGTGCTTGGATTCCTTGTATAATCCCTGA 897 0.4404 MNQPVAFAGNTAGPLPKQECRDMFAYRGCKFCLKVFDSPNSRRIHQEKCQHSGNAGIIGRFSNLGLRDNLAIGGGARGPQVVALACKMVGGGSDGSLDLCGRVCLIDEQENIIFHSYVKPPIPVTNYRYETTGIRPEYLRDAMPMRQVQRRIQDFLCNGEPMWTIRPRGGRARILVGHGLDHDLECLQIEYRAEKIRDTAKYPPLMKTSKLSNSLKYLTQAYLGQDPYEDCVATMRLYMRMRSQVHKIQDYPLASDPQNRNNFASWRQSELERMTPEQMLEISRSDYYCWCLDSLYNP 298
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01050 298 SMART exoiiiendus 80 247 IPR013520 -
Cca07g01050 298 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 12 294 - -
Cca07g01050 298 CDD REX4_like 82 238 IPR037431 GO:0006364|GO:0008408
Cca07g01050 298 Pfam Exonuclease 109 225 IPR013520 -
Cca07g01050 298 ProSitePatterns Zinc finger C2H2 type domain signature. 29 51 IPR013087 -
Cca07g01050 298 Gene3D - 78 255 IPR036397 GO:0003676
Cca07g01050 298 PANTHER OS02G0709000 PROTEIN 12 294 - -
Cca07g01050 298 SUPERFAMILY Ribonuclease H-like 97 244 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01050 Cca-Chr7 23002059 23004336 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01050 13 295 C2H2 Transcription Factor Family AT3G27970 72.260 2.88e-161 451
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01050 - - aprc:113862359 556.599