Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01047 ATGGGAGTCCACGGTCTCTGGGAACTACTCGCCCCTGTCGGTCGCCGCGTCTCCGTCGAAACCCTCGCCGGAAAAACCCTCGCCGTTGACGCGAGCATATGGATGGTGCAGTTCATCAAAGCGATGCGCGACGAGAAGGGCGAAATGGTTCGCAACGCCCATTTGCTCGGCTTCTTCCGTCGCATTTGCAAGCTTCTCTTCCTCCGCACCAAGCCCGTCTTCGTCTTCGACGGCGGAACCCCTGCCCTTAAGCGCCGCACCGTCATCGCACGCCGCCGCCTCCGCGAAAACGCCCAAGCCAAAGTCCGCAAGACCGCCGAGAAATTGCTGCTCAATCATTTAAAGGCACTAAGATTGAAGGAACTGGCTGATGATATTAAGAGCCAGAGGATGAAGCAGAATAGTGATAAGGGTCAGAAAAAATCTAATCAGAAGGACTTTGCTGGTAGTGATTCAGGAGGAAGTCAAGTGAAAGAGCCGGGTGAAATGTCTGCAGCTAAGAAAGACAGAAATTCTTTGCAGGCAACAGTATCAACTAGTTTCAACCAGGAGGAACTTGATGAAATTCCTTCAGAGGAAAAATGTGATGCAGATGAAGAGATTATACTGCCATCAGTAAATGAAGAAGTTGATATGGCTGTATTAGCTGCTTTGCCACAGTCAATGCAACTTGATATTCTTGCGCAGCTCAAAGGAAAGAAAACAGAAGGATTAATGAAGGAAGTTGACAACCAGAAACAACATGAGGCCATTTATCAGGGCAATGGTAAGGGGATTCTACTTGGTGAAACTGACATGGTAGGTTGTAGCTCAAGACGTGACAATGTTACATCAAGGAGTGACAATCAAGACACAATTGATGAAATGTTAGCTGCATCTATTGCCATGGAGGAAAATGAAGAGCTAGTAAACAAGGCATCAACTTCTGTTGGGGCTTCCACCATtgaggaagaggaaggtgactatgatgaagatgaagagatgatACTGCCAGCTATGCATGGTGAAGTTGATCCAGCTGTTCTAGCCTCATTGCCACCATCAATGCAACTGGACCTTCTTGTTCAGATGAGAGAGCGATTGATTGCAGAGAACAGACAAAAGTATCAGAAAGTCAAGAAGGATCCTGCAAAATTCTCCGAGCTACAAATACAAGCTTACCTTAAAACTGTTGCTTTCAGACGGGAGATAGATCAAGTGCAGAAAGCTGCAGCTGGAGGAGTAGGTGGTGTACAGACTTCACGTATTGCATCTGAAGCCAACAGAGAATATATATTCTCGTCATCTTTTACTGGTGATAAACAAGAACTTACCTCCACCAGATTAGAGAATAATAAAGATACACAACAGAAGGCACAGGGAGCACATCCTTCACAGAATCTTGAACATAGCATTGTGGCAAGAAATGATTCTAATAATTCAACTAGATTGGTTCCCAATGAACCTAGTGAGCCTGCTGATGAAAGTATTGAGACATATCTTGATGAGAGGGGTCGATTTCGAGTTAGTAGATTGAGAGCCATGGGGATGCGTATGACACGTGATATACAAAGAAATTTGGATTTGATGAAAGAGATTGAGCAGGAAAGAGCACATGTGAACAAGGCTGCAAATATTGGTACAGTGAAAAATGTGGAGAATAATGGTCCTTCGGAAAGTTCCAGGATCCAACTTGTTGATAAATCACAAGAGGTGAATGTTGACTTAGTTGGAGAGAATGTGCAAAATGAAAAAACAATCTTTGACAAGGATAATTCTATAGATATATTTTTTGAATATGATTGCAAGACTAAATTTCTTAATGGCGAGGATGATATATTTTCCAGTTTAGTAGGAGGAAATCCAGTGGCAATCATTTGTGCTGATGATAATGCAGCAACAGAGCAACCTTCTCATACTGATTCAGATTGTGATTGGGAAGAAGGAGTAATTGAAGGTAAGAATACCATTTTTCCAGAACATGATAAGGTAGGGTTGAAGTCTTCTGTTGCTGATGAGGATAATAATAATGACAGCGAAGTAGAATGGGAAGAAGGAGACTGTGATGGTGCTAAAAGCACCTTATTGTCAGGAAAATTGGCATCTCGAGGCTGGTTAGAGGAGGAGTCTGATTTGCAAGAGGCAATAAGGAGAAGTCTTGAAAGTAAAGGGGATGAGGAACTTAAACGCATGTCATCTGTAGATGAGCCTTCAAATCATTATGAGAACAAATTGGATCGTTGTTTAAAACATGGTGGTGATCAGAATTGTTCTGACCCAGTGGATTTAGATGATAACTCTGAGTTCCTGAACAATAAAAATAACATGGAGAGTTCCACTTTGTGTAGGGAAGACAGTACTGAACAAAATGAATCTCATGAAATTGAAGATGGAGATAAAAAGGATGATTTTGTTTCTGGAAATAATGCACAAACATTCCATTTTCATGGAAGTCATTCAAAGTCATCTGTAACATTTAATTCCAATAATACTGAGATATTGATCAATACACCTTGCAGTCTGGACAGTCGTTCTTGTTCTGAAGATTCAATTTCAGATAAGCATGATGGTGGTAAAGTGTCTTTCTATTGTAATAATACATCCAAATTTGATCCACTTGGTACAACAGAAGAGGAGAAAAAGAACTGTATTAATGAATCTGAACCATTGGGTATTTCTACCAACACTACCGAACCTGCTATTCTTTTAATGGATTCATCCTTGAATAAATCAACAGATAACCTTTATTTCAAGCCAAAATTTTCTCCTGAGGTCAATAAGGGAAGTTTCTATGAAGAAAGGAATACTAGCCCTGCCAATGATGTTGTTAAAACTTCTGGAAATTTTCCTGCTCATGCAGAGGTTAGCTTGGAGGAAGAAATGCAAGTTCTTGGTCAAGAATATATCAACCTAGAAAATGAGCAGAGGAAGCTAGAGCGGAATGCAGAATCTGTAAACAGTGAATTATTCACTGAATGTCAGGAACTACTGCAAATGTTTGGCTTGCCATATATTATTGCTCCAATGGAAGCAGAAGCGCAATGTGCTTATTTGGAACATGAGAAACTAGTTGATGGTGTTGTGACTGATGACTCTGATGTTCTTTTATTTGGGGCACGCAGTGTTTACAAAAATATATTTGATGACCGCAAATATGTAGAGACATACTTCATGGAGGACATTGAAAAGGAGCTTGGATTGACCAGAGAAAAATTAATACGCATGGCTTTACTTCTTGGGAGTGATTATACTGAAGGTGTAAGTGGGATTGGCATTGTTAACGCTATTGAGGTTGTTAATGCATTCCCTGAGGAAGATGGCCTCCAGAAGTTCCGACAATGGGTTGAGTCACCAGATCCCACTATCCTTGGAATGTTAGATGCAAAAGGTGGATCGAATACTAGAAAAAAGGGGTCAAAAGTTGAAGAAAAGATAAATCCATCAAATTCCGATATTAAAGAGTCGGCATCAGATAAGAACATCTCCTGTGCTCACGAGCAAAACAAGTTGCTAGGTTACATTCAAGAAATAAAGCAAACTTTCATCAATAAGCATAGAAATGTTAGCAAGAATTGGCATATTCCATCTTCTTTTCCAAGTGAAACAGTTATATCTGCTTACTATTCGCCAAATGTTGATAAGTCCACTGATCCTTTCACATGGGGAAAGCCAGACCATCTTGTTCTTCGCAAATTATGCTGGGAGAAATTTGGGTGGACTTTCCAGAAAGTAGATGAATTGCTATTACCTGTGTTAAAGGAGTACAACAAACACGAGACTCAATTGCGGTTGGAAGCATTTTACAGTTTTAATGAAAGATTTGCCAAAATCCGCAGCAAAAGAATTGAGAAAGCAGTAAAAGGAATTACTGGTAAGCAGCCTATAAATGGTTCTGCAGAAGAGTTGTCCAAGAGTAGAAAGACAGGGAGAGAACCTGAGGATAGCACATTGGAGGCTTCAAGGGGAACAGAAGAAAGTCTTGAAGGTAGAAGTAAATCAAAAATAAAACCGTCAAGGAAAAGGAAGAATGATGGGAATACTGTTGCTAAGGTGAAGTCAAAGAAAATGAAAGTTAATGACGATCCCTCTTCAACACCTGGTAAATCTGAGATGGAAAATTTACAGCCAAGTATGGAGACAGAAGAAGAGCAGTTTGATGGTAAGGCATTTATTCAGAATAgaagtggaagaggcagaggaagaggtaaaggtatgggaataaaaagaggaagggaaaaggaaAGACTCGGTTTTCAATCTTGTGAAACTGAAACGTCATTTGGGAGCAAAAGAGTGCTTATGGATAAAGCTCCAAAAGATGTGCGAAGGTCAATGCGATCACGGAAACCTGTCAACTATTCTTTCGAAGACACTGAATATGAAGATGCTGATGATTCATTTGATCAAAAATGCTATCAGAGTGGTCCAATAGAAGAAAATTTATCTCATACTCATGGCGCATGTGAAGGTGGTGCAACTGATTTCAACATGGGGAAAGAATGCAGTACAACGAATTTTCCTCCAAAAGAGAACTTGCCTACAGACTCTATTGACTCAGAAGGTTTGTTTTGCACGAATGCCGGGGAAAGTAGTCATCCTGTGACTGGCAATCATGACTCTTCTGATGACTACCTTCAAATGGGAGGTGGATTCTGTTTAGATGATAGTGAGACAGGTGACAAGCATAATGCAATTGATGATATCAATACAGATGCAGTGGATTATAATGCAGACTTTCCACACTGTTCTAATTGCGTGGACGAAACTGACCGTGATAAAAGTAGTTCAGATAAGTTATTTTCTGGCACTGAAAAGGCTGAGGCTGAAAATAGGATACAAGGTGAAGCGGCCTCTTGTAAATTCAATAGAGAGACAAATGACTTTCAAAAAGCTAGCAGTTGTGATAATTCTGAAATAGGGGTCTTGATACCAGAGAATGTTCATAACAATATTGGAGCCTCCACCGGAGCTTTTAGTGCTATCCCGTTTTTGAGGAAAAGAAGGAAGAACTGA 4992 0.3962 MGVHGLWELLAPVGRRVSVETLAGKTLAVDASIWMVQFIKAMRDEKGEMVRNAHLLGFFRRICKLLFLRTKPVFVFDGGTPALKRRTVIARRRLRENAQAKVRKTAEKLLLNHLKALRLKELADDIKSQRMKQNSDKGQKKSNQKDFAGSDSGGSQVKEPGEMSAAKKDRNSLQATVSTSFNQEELDEIPSEEKCDADEEIILPSVNEEVDMAVLAALPQSMQLDILAQLKGKKTEGLMKEVDNQKQHEAIYQGNGKGILLGETDMVGCSSRRDNVTSRSDNQDTIDEMLAASIAMEENEELVNKASTSVGASTIEEEEGDYDEDEEMILPAMHGEVDPAVLASLPPSMQLDLLVQMRERLIAENRQKYQKVKKDPAKFSELQIQAYLKTVAFRREIDQVQKAAAGGVGGVQTSRIASEANREYIFSSSFTGDKQELTSTRLENNKDTQQKAQGAHPSQNLEHSIVARNDSNNSTRLVPNEPSEPADESIETYLDERGRFRVSRLRAMGMRMTRDIQRNLDLMKEIEQERAHVNKAANIGTVKNVENNGPSESSRIQLVDKSQEVNVDLVGENVQNEKTIFDKDNSIDIFFEYDCKTKFLNGEDDIFSSLVGGNPVAIICADDNAATEQPSHTDSDCDWEEGVIEGKNTIFPEHDKVGLKSSVADEDNNNDSEVEWEEGDCDGAKSTLLSGKLASRGWLEEESDLQEAIRRSLESKGDEELKRMSSVDEPSNHYENKLDRCLKHGGDQNCSDPVDLDDNSEFLNNKNNMESSTLCREDSTEQNESHEIEDGDKKDDFVSGNNAQTFHFHGSHSKSSVTFNSNNTEILINTPCSLDSRSCSEDSISDKHDGGKVSFYCNNTSKFDPLGTTEEEKKNCINESEPLGISTNTTEPAILLMDSSLNKSTDNLYFKPKFSPEVNKGSFYEERNTSPANDVVKTSGNFPAHAEVSLEEEMQVLGQEYINLENEQRKLERNAESVNSELFTECQELLQMFGLPYIIAPMEAEAQCAYLEHEKLVDGVVTDDSDVLLFGARSVYKNIFDDRKYVETYFMEDIEKELGLTREKLIRMALLLGSDYTEGVSGIGIVNAIEVVNAFPEEDGLQKFRQWVESPDPTILGMLDAKGGSNTRKKGSKVEEKINPSNSDIKESASDKNISCAHEQNKLLGYIQEIKQTFINKHRNVSKNWHIPSSFPSETVISAYYSPNVDKSTDPFTWGKPDHLVLRKLCWEKFGWTFQKVDELLLPVLKEYNKHETQLRLEAFYSFNERFAKIRSKRIEKAVKGITGKQPINGSAEELSKSRKTGREPEDSTLEASRGTEESLEGRSKSKIKPSRKRKNDGNTVAKVKSKKMKVNDDPSSTPGKSEMENLQPSMETEEEQFDGKAFIQNRSGRGRGRGKGMGIKRGREKERLGFQSCETETSFGSKRVLMDKAPKDVRRSMRSRKPVNYSFEDTEYEDADDSFDQKCYQSGPIEENLSHTHGACEGGATDFNMGKECSTTNFPPKENLPTDSIDSEGLFCTNAGESSHPVTGNHDSSDDYLQMGGGFCLDDSETGDKHNAIDDINTDAVDYNADFPHCSNCVDETDRDKSSSDKLFSGTEKAEAENRIQGEAASCKFNRETNDFQKASSCDNSEIGVLIPENVHNNIGASTGAFSAIPFLRKRRKN 1663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01047 1663 MobiDBLite consensus disorder prediction 1581 1600 - -
Cca07g01047 1663 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 1 234 - -
Cca07g01047 1663 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS-RELATED 233 1602 - -
Cca07g01047 1663 MobiDBLite consensus disorder prediction 655 683 - -
Cca07g01047 1663 MobiDBLite consensus disorder prediction 777 796 - -
Cca07g01047 1663 MobiDBLite consensus disorder prediction 1355 1373 - -
Cca07g01047 1663 ProSitePatterns XPG protein signature 1. 70 84 IPR019974 GO:0016788
Cca07g01047 1663 SMART HhH_4 1062 1095 IPR008918 GO:0003677|GO:0003824
Cca07g01047 1663 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 1 234 - -
Cca07g01047 1663 PANTHER DNA REPAIR PROTEIN COMPLEMENTING XP-G CELLS 233 1602 - -
Cca07g01047 1663 MobiDBLite consensus disorder prediction 1426 1441 - -
Cca07g01047 1663 Pfam XPG I-region 994 1075 IPR006086 GO:0004518
Cca07g01047 1663 MobiDBLite consensus disorder prediction 753 776 - -
Cca07g01047 1663 MobiDBLite consensus disorder prediction 446 488 - -
Cca07g01047 1663 Pfam XPG N-terminal domain 1 96 IPR006085 GO:0004518
Cca07g01047 1663 CDD H3TH_XPG 1063 1207 - -
Cca07g01047 1663 Gene3D - 198 236 - -
Cca07g01047 1663 SMART xpgn3 1 98 IPR006085 GO:0004518
Cca07g01047 1663 MobiDBLite consensus disorder prediction 1285 1441 - -
Cca07g01047 1663 MobiDBLite consensus disorder prediction 752 796 - -
Cca07g01047 1663 Gene3D - 1060 1115 - -
Cca07g01047 1663 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Cca07g01047 1663 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 72 91 IPR006084 -
Cca07g01047 1663 MobiDBLite consensus disorder prediction 169 185 - -
Cca07g01047 1663 SUPERFAMILY PIN domain-like 2 1075 IPR029060 -
Cca07g01047 1663 Coils Coil 947 981 - -
Cca07g01047 1663 Gene3D - 1 146 - -
Cca07g01047 1663 CDD PIN_XPG_RAD2 977 1061 - -
Cca07g01047 1663 MobiDBLite consensus disorder prediction 128 144 - -
Cca07g01047 1663 Gene3D - 941 1059 - -
Cca07g01047 1663 MobiDBLite consensus disorder prediction 446 480 - -
Cca07g01047 1663 MobiDBLite consensus disorder prediction 128 194 - -
Cca07g01047 1663 ProSitePatterns XPG protein signature 2. 994 1008 IPR019974 GO:0016788
Cca07g01047 1663 MobiDBLite consensus disorder prediction 1333 1354 - -
Cca07g01047 1663 MobiDBLite consensus disorder prediction 1398 1412 - -
Cca07g01047 1663 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 1060 1269 IPR036279 -
Cca07g01047 1663 MobiDBLite consensus disorder prediction 1446 1465 - -
Cca07g01047 1663 MobiDBLite consensus disorder prediction 1296 1326 - -
Cca07g01047 1663 PRINTS Xeroderma pigmentosum group G protein signature 54 77 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Cca07g01047 1663 PRINTS Xeroderma pigmentosum group G protein signature 96 118 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Cca07g01047 1663 PRINTS Xeroderma pigmentosum group G protein signature 2 19 IPR001044 GO:0003697|GO:0004519|GO:0005634|GO:0006289
Cca07g01047 1663 Pfam Ubiquitin binding region 206 229 IPR025527 -
Cca07g01047 1663 Pfam Ubiquitin binding region 336 361 IPR025527 -
Cca07g01047 1663 SMART xpgineu 991 1060 IPR006086 GO:0004518
Cca07g01047 1663 CDD PIN_XPG_RAD2 2 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01047 Cca-Chr7 22877775 22890437 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01047 985 1092 Core DNA Replication Machinery Family AT5G26680 36.937 4.16e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01047 K10846 - gmx:100820295 2508.02