Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01040 ATGTACCTGCTTCTTCTGAAACTGCAAATTCTCATCATATGGGCCTTTTCTCCATCTCTTGTTTCAAGCTCCATGACCGAGCTTGACACACTCATGGCCATCAGAGACTCTCTGGACCCAGAGAACCGTGTGTTGGTCTCATGGACCCCACATTCGGACCCTTGTAGTAGTGGCTCTTTTGAGGGTGTGGCTTGCAATGAGCAAGGTCTTGTTACCAATATTTCGCTGCAGGGAAAGGGTCTTTCTGGAAGGATACCTGAAGCCGTGGCTGGTCTCAAGAGCTTGACGGCTCTCTACCTTCACTTCAATGCCCTCAATGGGATGTTACCAAAGGAGATTACCACTTTGACTTGGTTAACTGATTTGTATCTCAATGTCAATAACCTCTCTGGTCATATCCCTCCTGAGATTGGCAATATGTCAAATCTTCAAGTTTTGCAGCTTTGTTATAACAAGTTTAGTGGGAGTATACCTACTGAACTGGGGAGGTTAAGGAAGCTCAGTGTTGTTGCACTGCAATATAATCAATTAAGTAGCGCAATTCCAGCGAGTTTGGGTGAAGTGGAGACATTGGAGCGATTAGATCTTAGCTTCAATACCCTGTTTGGTCCAATTCCAGTGACATTGGCTAATGCACCTAAGCTGGAGAGTCTAGATATTCGAAACAATTCTCTCTCGGGTAGTGTCCCCACAGCTCTGAAAAGACTCAAAAGTGGGTTTCAGTACATGAACAACCCTGGTTTATGTGGGACAGAATTTACCAATTTAGCTTCTTGCAAAGCAGTAAGCAGTTCAGACCCAGTCAGACCCGAACCATACGAGCCCGTTAATATTTCCTTAACTGAACCAAAACCTGAAAACTGCCGCAACTGTAAAAACACATCAGAATCATCAAAAACAGGATTGGTTTTTGCGGTGGTTGGAGTTTTCTCTGCTTCCACTATTTCTGGTCTACTTTTGCTCCTACGACACCGCCGCCAGAAGCAGAAAGTTGCAAGTTCCAACAACCAGACCAAGCAAGCGTGCGTGCAAAGTGCATCTCCTCTGATAAGTTTGGAGTATTCAAACGGATGGGATCCATTGTCCAAAGGTGGAAGCGGGTACTCGCAGGAGTTTCTGGAGAGCCTCGTGTTGAATCTGGAAGAAGTGGAACGCGCAACTCGGAGCTTCTCGGAGGTGAATCTGTTGGGGAAGGGTAGTTTCTCAGCTGCATACAGTGGGGTGTTAAGAGACGGTTCTGTGGTGGTTGTGAAGTGCATTGCCAAGACAAGCTGCAAGGCTGATGAAGCTGAGTTTCTGAAAGGCTTGAAGGTGTTGAGCTCGTTGAGGCATGAAAATGTGGTGCGGTTGAGAGGGTTTTGCTGCTCCAAAGGCCGCGGGGAATGTTTTCTGGTTTATGAGTCTCTCGCAAATGGGAGTTTGTTGGAGTATCTTGATGTTGAGAGAGAGAGTGGAAGGGTGCTTCAATGGTCCACTAGAGTGTTCATCATTCGTGGTATTGCCAAAGGTATTTGTTATCTGCATGGGAAGAAAGGAAGCAAACATGGTATAGTGCACCAGAATATATCAGCTGAAAATATACTTCTTGATGTTGGGTATAAAGCTTTACTTGCAGATTCAGGTGTTCACAAGCTCCTTGAAGATGATGTTGTTTTTTCTGCTCTCAAAGCTAGTGCTGCCATGGGATATCTGCCTCCAGAGTACACCACAACGGGTCGTTTGACCCAAAAGAGTGATGTGTATGCATTTGGAGTGATAGTTTTTCAGCTTCTCACTGGAAAACGTGACACCACTCAATTAAATTGCCAAAGGGTAGAAGGTGCTAGCTTGAATGATATAATAATTGATGAGAATCTTGAAGGGGTGTTCTCAGAATCAGAGGCAACCAAGCTGAGAAGACTAGTTTTGCTCTGCACCCATGAATCCCCACATCTGCGACCATCTATGGACAGTGTAATGCTAGAACTGGATGAACAGTAG 1980 0.453 MYLLLLKLQILIIWAFSPSLVSSSMTELDTLMAIRDSLDPENRVLVSWTPHSDPCSSGSFEGVACNEQGLVTNISLQGKGLSGRIPEAVAGLKSLTALYLHFNALNGMLPKEITTLTWLTDLYLNVNNLSGHIPPEIGNMSNLQVLQLCYNKFSGSIPTELGRLRKLSVVALQYNQLSSAIPASLGEVETLERLDLSFNTLFGPIPVTLANAPKLESLDIRNNSLSGSVPTALKRLKSGFQYMNNPGLCGTEFTNLASCKAVSSSDPVRPEPYEPVNISLTEPKPENCRNCKNTSESSKTGLVFAVVGVFSASTISGLLLLLRHRRQKQKVASSNNQTKQACVQSASPLISLEYSNGWDPLSKGGSGYSQEFLESLVLNLEEVERATRSFSEVNLLGKGSFSAAYSGVLRDGSVVVVKCIAKTSCKADEAEFLKGLKVLSSLRHENVVRLRGFCCSKGRGECFLVYESLANGSLLEYLDVERESGRVLQWSTRVFIIRGIAKGICYLHGKKGSKHGIVHQNISAENILLDVGYKALLADSGVHKLLEDDVVFSALKASAAMGYLPPEYTTTGRLTQKSDVYAFGVIVFQLLTGKRDTTQLNCQRVEGASLNDIIIDENLEGVFSESEATKLRRLVLLCTHESPHLRPSMDSVMLELDEQ 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01040 659 Gene3D Phosphorylase Kinase; domain 1 366 467 - -
Cca07g01040 659 SUPERFAMILY L domain-like 25 238 - -
Cca07g01040 659 SUPERFAMILY Protein kinase-like (PK-like) 370 653 IPR011009 -
Cca07g01040 659 Pfam Leucine Rich Repeat 214 235 IPR001611 GO:0005515
Cca07g01040 659 Pfam Protein tyrosine and serine/threonine kinase 394 655 IPR001245 GO:0004672|GO:0006468
Cca07g01040 659 ProSiteProfiles Protein kinase domain profile. 390 659 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01040 659 ProSitePatterns Protein kinases ATP-binding region signature. 396 422 IPR017441 GO:0005524
Cca07g01040 659 PANTHER BNAC04G56910D PROTEIN 9 657 - -
Cca07g01040 659 Pfam Leucine rich repeat N-terminal domain 27 66 IPR013210 -
Cca07g01040 659 Gene3D Transferase(Phosphotransferase) domain 1 469 659 - -
Cca07g01040 659 Gene3D Ribonuclease Inhibitor 24 267 IPR032675 -
Cca07g01040 659 PANTHER LEUCINE RICH REPEAT KINASE 2 9 657 - -
Cca07g01040 659 CDD STKc_IRAK 396 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01040 Cca-Chr7 22443511 22447269 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01040 8 503 Miscellaneous Gene Families AT4G22730 48.375 2.95e-160 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IV Cca07g01040 PK_Tyr_Ser-Thr 3.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01040 - - var:108327466 1001.12