Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01017 ATGAATTTTGTACCAAATAACACCAAAGTTGAATTCATGCATGGATCCCTCAACACCAACAAGGGAATCTGGGACTTTTCTAATAAAAATCCCCTTCCCTCTAGTGCAAATGCAACTTCACAACCTCAGGTGCAGAGGAAGATTACTCCCAACTTTCGAAATAATATTATAAACAAAATCAAAAGCCAGTGGAGTGCCGAAGAGGATAGAGTCCTCTTGAAATTGGTGAAACGCTTCGGACTCAAAAAATGGTCTCAGATCTCCAGGTTGCTGAAAGGCAAGATTGGGAAACAGTGTAGAGAGAGATGGCACAATCATCTCAAGTCAAAGATTAAGAAAGTGGCATTAAATGAAGAGGACAAACTATTGATCAAAGCTCACAAGGAATTTGTGAATAAGTGGGCAAAAATTGCAAGGAGAATGTCTGGTAAGACTGAGAACACCATCAAGAACAATTGGAGTGCTACAAAGTGTCAACTGAATAATGCAATAAAGCATAGGGTTAAGTGCACCACCTCAAAAGGAGCAATAAGGCTTTATCAAAGCTACATGAGGCAAGTCACCAAGGTTGAGAAGGAGTTGAAGAAACCCATGAACAACCTCTAG 606 0.401 MNFVPNNTKVEFMHGSLNTNKGIWDFSNKNPLPSSANATSQPQVQRKITPNFRNNIINKIKSQWSAEEDRVLLKLVKRFGLKKWSQISRLLKGKIGKQCRERWHNHLKSKIKKVALNEEDKLLIKAHKEFVNKWAKIARRMSGKTENTIKNNWSATKCQLNNAIKHRVKCTTSKGAIRLYQSYMRQVTKVEKELKKPMNNL 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01017 201 ProSiteProfiles Myb-like domain profile. 61 107 IPR001005 -
Cca07g01017 201 SMART sant 60 109 IPR001005 -
Cca07g01017 201 SMART sant 111 159 IPR001005 -
Cca07g01017 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 118 153 IPR017930 -
Cca07g01017 201 CDD SANT 64 107 IPR001005 -
Cca07g01017 201 ProSiteProfiles Myb-like domain profile. 118 157 IPR001005 -
Cca07g01017 201 Gene3D - 62 111 - -
Cca07g01017 201 Pfam Myb-like DNA-binding domain 64 119 - -
Cca07g01017 201 CDD SANT 118 153 IPR001005 -
Cca07g01017 201 PANTHER MYB DOMAIN PROTEIN 100-RELATED 43 176 - -
Cca07g01017 201 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 111 IPR017930 -
Cca07g01017 201 PANTHER MYB PROTEIN-RELATED 43 176 - -
Cca07g01017 201 SUPERFAMILY Homeodomain-like 58 153 IPR009057 -
Cca07g01017 201 Gene3D - 117 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01017 Cca-Chr7 21461062 21463908 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01017 60 187 MYB Transcription Factor Family AT4G18770 51.938 9.18e-41 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca07g01017 Myb_DNA-bind_6 1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01017 K09422 - ccaj:109799074 271.166