Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01016 ATGGAGTTTGATCTAAGCTTCTCAGAGAAAAATCCCTACCTTTCTGGGATTTACTCTGACATCAAATCAGAGATCCCCATAGAGGAAAACACCACCTTCATGTGCCAAAACAATTTCAGCCATTTTCAGCACCTTTCCCTAAATGGTCCAAACCATGAGAACCCTGCAAGTTTTTTCACTGAGGGTTCTTCCTCCTTCATCACCCCATTATTCTCTTTGTCCTCAACAACTCCTCCTTCAAGCTACCCCAATGATCAGTCCCTCAAAAGAGGCTTTGTCAACACCTATTACCCCATGACTTTTGTACCAAACAACACCAAAGTTGAACCCATGTATGGCCACCTCAACACCAGCAAGGGCATCTGGGACTTTTCCCAGAAAATTCCCTTTCCCTCTGGTGCAAGTGCAACTTCACAGCCTCAGGTGCAGAGAAGGAGCATTACTGTCAAATTTCAGAACCAGATTAGCAACATAATCAAAGGCCAGTGGAGTGCTGATGAGGACAGGGTCCTCGTCCAATTGGTGAAACGTTTTGGACTGAAAAAATGGTCTCAGATCGCGAGGTTGCTGAATGGCCGGATTGGGAAACAGTGCAGAGAGAGATGGCACAATCATCTCAGGCCAAACATTAGGAAGGAGTCATGGAGCGAAGAGGAGGACAAAGTGCTGATCGAGGCTCACAAGGAACTGGGGAACAAGTGGGCGGAGATCGCGAGGAGAATGCCAGGGAGGAGCGAGAACACCATCAAGAACCACTGGAACGCCACAAAGCGTCGACTGTACGCGCGGAAGCAGAGGATCAAGCGCACCACTTCCAAGGGAGCAACCACTCTTCTCCAGAGCTACATAAGGCAAGTCACCGAGGCTGAGAACAACCACCTCAACAAACCCATCAACAACAACCTCCACCAACGCCCCTATCGCGTTCGCTACGAGAGCTCCGAGGGTGGCTTCACCTCCGAGGAGGAGGAACCTGCCTGGCACCGCCACCTGCCGGTCGCCAATGATGACTATGTGCCCGTCATGCTCACCTCCGAGGAGATGGCCACTGCCTCTGCGGTGGAGGCTGGCGCAGTGGATTATGGGGTGGCCATGGAGAAGGAGATGGATCTCATGGAGATGATCTATCGTAAAGCTGCTTGA 1143 0.5092 MEFDLSFSEKNPYLSGIYSDIKSEIPIEENTTFMCQNNFSHFQHLSLNGPNHENPASFFTEGSSSFITPLFSLSSTTPPSSYPNDQSLKRGFVNTYYPMTFVPNNTKVEPMYGHLNTSKGIWDFSQKIPFPSGASATSQPQVQRRSITVKFQNQISNIIKGQWSADEDRVLVQLVKRFGLKKWSQIARLLNGRIGKQCRERWHNHLRPNIRKESWSEEEDKVLIEAHKELGNKWAEIARRMPGRSENTIKNHWNATKRRLYARKQRIKRTTSKGATTLLQSYIRQVTEAENNHLNKPINNNLHQRPYRVRYESSEGGFTSEEEEPAWHRHLPVANDDYVPVMLTSEEMATASAVEAGAVDYGVAMEKEMDLMEMIYRKAA 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01016 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 210 IPR017930 -
Cca07g01016 380 CDD SANT 214 257 IPR001005 -
Cca07g01016 380 Gene3D - 159 211 - -
Cca07g01016 380 ProSiteProfiles Myb-like domain profile. 155 206 IPR001005 -
Cca07g01016 380 PANTHER MYB PROTEIN-RELATED 120 301 - -
Cca07g01016 380 SUPERFAMILY Homeodomain-like 157 253 IPR009057 -
Cca07g01016 380 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 211 261 IPR017930 -
Cca07g01016 380 CDD SANT 163 206 IPR001005 -
Cca07g01016 380 ProSiteProfiles Myb-like domain profile. 207 257 IPR001005 -
Cca07g01016 380 Pfam Myb-like DNA-binding domain 163 221 - -
Cca07g01016 380 PANTHER MYB DOMAIN PROTEIN 100-RELATED 120 301 - -
Cca07g01016 380 SMART sant 159 208 IPR001005 -
Cca07g01016 380 SMART sant 211 259 IPR001005 -
Cca07g01016 380 Gene3D - 214 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01016 Cca-Chr7 21414301 21417651 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01016 156 286 MYB Transcription Factor Family AT4G18770 65.649 9.79e-60 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca07g01016 Myb_DNA-bind_6 1.4e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01016 K09422 - ccaj:109799074 742.651
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01016 07 21414301 21417651 Cca07g01016 07 21414301 21417651 ECH
Cca07g01016 07 21414301 21417651 Cca09g00070 09 1095923 1098605 ECH