Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01012 ATGTACTCATCATGGGTTGTCTTGATCTTCACCTCGTTTTTCTCAGTTGCAGTCTCGGATCCACGAATCACGGAAGCGGGACTGTACTGCGGCACAACGAAGGCGCCTCTGAAGGCGAACTACATCCCAAGCTTCATCAACGAAATGGAGAAGCTCTCGCAGAAGGTGGCGAGTAGCAACTGGGGCATGCACTCcatcaacgcatcaccatcaccatcaccatcatcatcatcatcatcatcatcttcatcatcttcatcgtcatcgtcatcaGTTATTCCCATATTTGGGTTCGCGCAATGCTTCGGCGACATGTCGCACACGGACTGTCTCCTCTGCTACGCGGCCAGCCGGACGAAGCTGCCGCGGTGCCTCCCATCGGTGGCGGCGCGCATCTACCTGGACGGCTGCTTCCTGCGCTACGACAACTACAACTTCTACGCGGAGGCCACCGACGGCGCGAGGGACGGCGTGAACTGCAGCGGCGGGGGAGTGGAGGAGGACGGGAGGGCGGGGCTTGGGGAGAGGGTGGGGAGGGTGGTTGAGAGAGTGGTGGGCGTGGCGGTGGGGGAAggtggtggtggtggtggtggtggtggGGTTGGGGGGGGGGAGGAGGTTGAGGGGGTTTATGCTTTGGCTCAGTGCTGGAAGAGTGTTgggagggaggggtgtagggagtgcttgaggaaagctgggagggaggTTAGAGGGTGCTTGCCCAAGAGGGAAGGGAGGGCCTTGAATGCTGGATGCTATTTGAGGTATTCAACTCACAAGTTCTATAATCAACAACCTCTTCTTCATGCAGATCCTCAAAATGGATCTTTAAGGAGAAGAGGAGTCATAGTAGCAGAAGTATTGGCAGCAGCTGCAGTTATAATGCTCGCTCTCTCTGCCTCTTATGCGGCCTTCACAAAATTGTCAAAGATAAAAAAAGAAAACAATAACCTTGGTCAGATTTCCTCTTCCATAAGCAAATCTAGCTTGAATTACAAGTATGAAACACTTGAGAAGGCCACGGATTATTTCAACTCTTCAAGAAAAATAGGCCAAGGTGGAGCTGGTTCAGTTTACAAAGGTGTTCTCCCAAATGGGAAAGTTGTTGCGGTTAAGAGGTTGATCTTCAATAACAGGCAATGGGTGGATGAGTTCTTCAATGAAGTGAATTTGATTAGCGGAATTGAACACAAGAACCTTGTTAAACTATTGGGTTGTAGTATTGAAGGCCCTGAGAGCCTCCTTGTGTATGAGTACTTACCCAAAAAGAGTTTAGACCAATTTATTTTCGAAAAGAACAGAACTCAGATTCTAAACTGGAAGCAGCGGTTTAATATCATTCTTGGAACAGCAGAAGGGCTTGCATATCTTCATGAAGGCACTAAAATAAGAATAATCCATAGAGACATCAAAAGCAGCAATATTCTTCTGGACGAGAATCTTATTCCTAAGATTGCAGATTTCGGCCTTGCCCGGTGTTTTGGTGCTGATAAGTCACATTTGAGCACTGGAATTGCAGGAACACTAGGTTACATGGCTCCCGAGTACCTAATTCGAGGACAACTTACAGACAAAGCTGATGTGTATAGTTTTGGGGTACTTGTTCTGGAGATTGTAAGTGGCAGGAGAAATAACGTCTTCAGAGAGGACTCTGGTTCACTTCTACAAACTGTTTGGAAACTTTACCGATTAAACACATTAACTGAAGCTATCGATCCTTGCTTGGGTGGTGATTTTCCTGAAACTGAAGCATCAAGGGTGTTTCAGATTGGATTGCTTTGCACACAAGCTTCAGCTACTCTAAGGCCATCCATGTCTCAAGTTGTTCACATGCTAAGTAATTCAAATGTGAATGTTCCAACACCAAATCAACCCCCATTTTTGAACACTGGAGTGCAAGACTCAGACAGCTCCATTAAGTCTTATAATAGCACTAACAGCTTCATATCCAATGCCTTGAAGAAGATTGGAGTGTCCTACAGCTACTCAGAGTCCTCTACTTCACGCAACTCAGACGGCCCATCAAGAAGTGAAGAATCAATTGTCCAAGTTTGA 2055 0.4345 MYSSWVVLIFTSFFSVAVSDPRITEAGLYCGTTKAPLKANYIPSFINEMEKLSQKVASSNWGMHSINASPSPSPSSSSSSSSSSSSSSSSSVIPIFGFAQCFGDMSHTDCLLCYAASRTKLPRCLPSVAARIYLDGCFLRYDNYNFYAEATDGARDGVNCSGGGVEEDGRAGLGERVGRVVERVVGVAVGEGGGGGGGGGVGGGEEVEGVYALAQCWKSVGREGCRECLRKAGREVRGCLPKREGRALNAGCYLRYSTHKFYNQQPLLHADPQNGSLRRRGVIVAEVLAAAAVIMLALSASYAAFTKLSKIKKENNNLGQISSSISKSSLNYKYETLEKATDYFNSSRKIGQGGAGSVYKGVLPNGKVVAVKRLIFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPKKSLDQFIFEKNRTQILNWKQRFNIILGTAEGLAYLHEGTKIRIIHRDIKSSNILLDENLIPKIADFGLARCFGADKSHLSTGIAGTLGYMAPEYLIRGQLTDKADVYSFGVLVLEIVSGRRNNVFREDSGSLLQTVWKLYRLNTLTEAIDPCLGGDFPETEASRVFQIGLLCTQASATLRPSMSQVVHMLSNSNVNVPTPNQPPFLNTGVQDSDSSIKSYNSTNSFISNALKKIGVSYSYSESSTSRNSDGPSRSEESIVQV 684
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01012 684 SMART serkin_6 344 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01012 684 Pfam Protein kinase domain 345 560 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01012 684 ProSiteProfiles Gnk2-homologous domain profile. 154 261 IPR002902 -
Cca07g01012 684 ProSiteProfiles Gnk2-homologous domain profile. 40 146 IPR002902 -
Cca07g01012 684 Pfam Salt stress response/antifungal 205 258 IPR002902 -
Cca07g01012 684 Pfam Salt stress response/antifungal 60 144 IPR002902 -
Cca07g01012 684 SUPERFAMILY Protein kinase-like (PK-like) 327 645 IPR011009 -
Cca07g01012 684 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 10 677 - -
Cca07g01012 684 MobiDBLite consensus disorder prediction 663 684 - -
Cca07g01012 684 Gene3D Phosphorylase Kinase; domain 1 303 419 - -
Cca07g01012 684 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 10 677 - -
Cca07g01012 684 ProSiteProfiles Protein kinase domain profile. 344 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g01012 684 MobiDBLite consensus disorder prediction 68 88 - -
Cca07g01012 684 Gene3D Transferase(Phosphotransferase) domain 1 420 622 - -
Cca07g01012 684 CDD STKc_IRAK 350 612 - -
Cca07g01012 684 Gene3D - 28 146 IPR038408 -
Cca07g01012 684 Gene3D - 187 261 IPR038408 -
Cca07g01012 684 ProSitePatterns Serine/Threonine protein kinases active-site signature. 465 477 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01012 Cca-Chr7 21161312 21165801 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01012 7 509 Receptor kinase-like Gene Family AT5G40380 54.617 0.0 551
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Cca07g01012 Pkinase 3.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01012 - - ccaj:109803078 1197.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01012 07 21161312 21165801 Cca07g01012 07 21161312 21165801 ECH