Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g01001 ATGGCCTCTTCTAGCTACTCGAATTCTCCCTGTGCTGCCTGCAAGTTTTTGAGAAGGAAATGCATGCCTGATTGCATATTTGCCCCATATTTCCCTCCAGAAGAGCCTCAAAAGTTTGCCAATGTTCACAAGATATTTGGTGCAAGCAACGTGAGCAAACTTCTGAATGAAGTCCAACCCCACCAAAGAGAGGATGCAGTGAACTCTCTGGCCTATGAAGCTGAGGCACGGATAAAGGATCCAGTTTATGGCTGTGTTGGGGCCATTTCAGTGCTCCAAAGGCAAGTCATTAGGCTCCAAAAGGAACTTGATGCCACAAACGCTGATTTGATCCGCTATACCTGCAATGAAATGCCAACTACTCAAGATGGGAGAAGAATTGCTGATAGTGGAGCTTCTTCTCTTGCTCAATCTCCTGGTTATTATTACCCTTCTCCTTGGAACAATGATCCACTTGGGGATGGTTATCACAGAGGTGACAATAATATGTGA 492 0.4512 MASSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKLLNEVQPHQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVIRLQKELDATNADLIRYTCNEMPTTQDGRRIADSGASSLAQSPGYYYPSPWNNDPLGDGYHRGDNNM 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g01001 163 Coils Coil 89 109 - -
Cca07g01001 163 MobiDBLite consensus disorder prediction 143 163 - -
Cca07g01001 163 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Cca07g01001 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 151 - -
Cca07g01001 163 Pfam Lateral organ boundaries (LOB) domain 10 106 IPR004883 -
Cca07g01001 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 1 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g01001 Cca-Chr7 20906321 20908650 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g01001 4 126 AS2 family AT3G27650 78.571 2.76e-70 207
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca07g01001 LOB 8.7e-43 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g01001 - - var:108328620 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g01001 07 20906321 20908650 Cca07g01001 07 20906321 20908650 ECH
Cca07g01001 07 20906321 20908650 Cca09g00057 09 889919 891805 ECH