Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00994 GTAAAGCATCTACGAGAAAACTTATATACAGCGATTCTTTTTCAGGACATATCGTATTTTGATAAAGAACGAGTTGGTGACTTGACAAGCAGGCTTGCAGCTGATTGTCAACGACTATCCCATGTTATAGGAAATGATCTTCAGCTTATATTACGCAACACTTGTCAGGGAACAGGAGCAATAATTAATTTGATGGCTTTATCTTGGCCTCTGGCATTATCAGCCTTGGTGATTTGTTCTATTTTATCCGCAATTTTCCTGGTTTTTGGACAGTATCAAAGAAAGGCAGCAAAGTTAATCCAAGATTTCACAGCTTGTGCCAATGACGTTGCTCAGGAGACACTTTCTTCAATAAGAATTGTCCGAGCTTATGGAACATTAAAAAATGAATTTGGAAGGTACCAGCATTGGCTACAGAGCTTGGCATTTATAAATGTTCGAGAGAGTGTGTCTTACGGGTTCTGGAACCTGATCTTTAACACCTTATACCGTTCAACTCAGATATTTGCACTGCTGTTAGGAGGTATGTCTGTTCTCAGATGTCGTGTTACTGTGGAACAACTTACCAAGTATGTACTATACTGCGAGTGGTTGATTTATGCTACGTGGAGGGTGACAAATAGCTTAACATCGTTACTGCAGTCCATTGGAGCATCTGAACAAATTTTCCAACTGATGAATCTTTTGCCCAGTGACCAATTCTTAGCCAAAGGCAATTTAGTGGGGCATATTCAGTTCGCAAATGTATCATTTCATTATCCTGCAAGGAGTATGATGCCTGTTCTAGAACACTTAAACTTCTCCATAGAAGCAAATCAAGTCATTGCCATTGTTGGTCTAAGTGGTAGTGGAAAGAGCACATTATTCAACCTTTTACTCCGTCTCTATGAGCCTAGTAGTGGTCAGATATATATTGATGGGTTCCCTCTTAAAGAGTTGGATATCAGGTGGCTGAGGCAGAACATCGGATATGTTTCACAGGAACCCCGTCTCTTTCATATGGACATCAAGTCAAACATAAAGTATGGTTGCCCTAGGAACATAAAACAAGAAGATATTGAATGGGCAGCGAAAAAGGCCTATGCCCATGACTTTATATCTTCACTTCCTAATGGATATAAAACCCTAGTTGATGACAATGCACTTAGTGGTGGACAAAAGCAGCGAATTGCCATCGCCAGAGCCATTCTTAGGGACCCTGTTATTATGATACTTGATGAAGCCACCAGTGCTCTAGATTCTGAGAGTGAGCATTATATTAAGGAGGTATTGTATGCGTTAAAAGATGAATCTAAAACAAGAACCATCATAATCATAGCACATAGGCTTTCTACCATTAAAGCTGCTGATAAGATCTTTGTTATGGATGATGGTCGCATCATTGAGAAGGGAGACCATGAAGAGCTTCTGCTCAGGGATGGGCTCTATGCAAAATTAAATAAAATTCAAGCAGATATTTTGACTTGA 1467 0.3974 VKHLRENLYTAILFQDISYFDKERVGDLTSRLAADCQRLSHVIGNDLQLILRNTCQGTGAIINLMALSWPLALSALVICSILSAIFLVFGQYQRKAAKLIQDFTACANDVAQETLSSIRIVRAYGTLKNEFGRYQHWLQSLAFINVRESVSYGFWNLIFNTLYRSTQIFALLLGGMSVLRCRVTVEQLTKYVLYCEWLIYATWRVTNSLTSLLQSIGASEQIFQLMNLLPSDQFLAKGNLVGHIQFANVSFHYPARSMMPVLEHLNFSIEANQVIAIVGLSGSGKSTLFNLLLRLYEPSSGQIYIDGFPLKELDIRWLRQNIGYVSQEPRLFHMDIKSNIKYGCPRNIKQEDIEWAAKKAYAHDFISSLPNGYKTLVDDNALSGGQKQRIAIARAILRDPVIMILDEATSALDSESEHYIKEVLYALKDESKTRTIIIIAHRLSTIKAADKIFVMDDGRIIEKGDHEELLLRDGLYAKLNKIQADILT 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00994 488 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 1 214 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g00994 488 PANTHER ATP-BINDING ABC TRANSPORTER 1 487 - -
Cca07g00994 488 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 483 IPR027417 -
Cca07g00994 488 Gene3D ABC transporter type 1, transmembrane domain 2 241 IPR036640 GO:0005524|GO:0016021
Cca07g00994 488 SMART AAA_5 271 459 IPR003593 -
Cca07g00994 488 PANTHER ABC TRANSPORTER B FAMILY 1 487 - -
Cca07g00994 488 Pfam ABC transporter 262 410 IPR003439 GO:0005524
Cca07g00994 488 SUPERFAMILY ABC transporter transmembrane region 2 232 IPR036640 GO:0005524|GO:0016021
Cca07g00994 488 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 244 482 IPR003439 GO:0005524
Cca07g00994 488 ProSitePatterns ABC transporters family signature. 382 396 IPR017871 GO:0005524
Cca07g00994 488 Pfam ABC transporter transmembrane region 2 196 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Cca07g00994 488 Gene3D - 242 483 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00994 Cca-Chr7 20411452 20435781 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00994 4 483 Calmodulin-binding Proteins AT2G36910 36.437 4.05e-74 252
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00994 - - gmx:100797529 878.626
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00994 07 20411452 20435781 Cca07g00994 07 20411452 20435781 ECH