Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00990 ATGAAGGACCGTAAGACCGGCCAGCCTCGCGGTTTCGGCTTCATAACCTACGCTGATGCCTCTGTGGTTGATAGTGTTATTGAGGACACTCACATTATCAATGGCAAGCAAGTTGAGATTAAGCGGACGATACCCCGAGGTGCTGTTGGCTCGAATTCGAAGGACTTCAGAACGAAAAAGATTTTTGTTGGTGGGATTCCTTCGACTGTAACCGAAGACGAATTTAGGGATTTCTTTACACGCTATGGAGAAGTCAAAGATCACCAAATAATGCGGGACCACTCTACTAATCGTTCACGTGGCTTTGGGTTTATCACCTATGACTCTGAAGAAGCTGTTGATGATCTCTTATCCGTGGGAAACAAAATTGAGTTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCAGAACCAAAGAAGCCTAATCCACCAGCCCCATCATCCAAGCGCTATAATGACTCTCGTTCTTCATATGGTGGTGGATACGGAGATGCTTATGACAGTGGATTTGGTGGTAATTTTGATATGGGTGGCTATAGGTCAGGTGGTGCCTATGGTGGTAGGGGAAGTGCTTATGGTGGCTTTGGAAGTGAATTTGCTGGGTATGGTGGATATGCTGGTTCCTTGGGGCCTTATAGAGGTGACCCTTCACTTGGGTATGCTGGTCGATATGGTGGAGGTTTTGGCAGAGGTTATGATCTTGGTGGGTATGGACCTAATGAAGGTTATGGGGCATATGGTGGTGGTGGCTCCTCTGGTAGCGCCTATGGAAGCAACTATGATGCCAGCCTAGGGGGTGGATATGGGGGGCCAGGTGGAGGCTCTTTTTATGGGACTAGAGGGGGATATAGTGGTGCAGGAACTGGTCGATATCATCCTTATGGAAGATAG 888 0.4797 MKDRKTGQPRGFGFITYADASVVDSVIEDTHIINGKQVEIKRTIPRGAVGSNSKDFRTKKIFVGGIPSTVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITYDSEEAVDDLLSVGNKIEFAGAQVEIKKAEPKKPNPPAPSSKRYNDSRSSYGGGYGDAYDSGFGGNFDMGGYRSGGAYGGRGSAYGGFGSEFAGYGGYAGSLGPYRGDPSLGYAGRYGGGFGRGYDLGGYGPNEGYGAYGGGGSSGSAYGSNYDASLGGGYGGPGGGSFYGTRGGYSGAGTGRYHPYGR 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00990 295 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 295 - -
Cca07g00990 295 SUPERFAMILY RNA-binding domain, RBD 1 49 IPR035979 GO:0003676
Cca07g00990 295 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 61 129 IPR000504 GO:0003723
Cca07g00990 295 Gene3D - 50 168 IPR012677 -
Cca07g00990 295 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 295 - -
Cca07g00990 295 Gene3D - 1 48 IPR012677 -
Cca07g00990 295 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 59 137 IPR000504 GO:0003723
Cca07g00990 295 SUPERFAMILY RNA-binding domain, RBD 55 166 IPR035979 GO:0003676
Cca07g00990 295 SMART rrm1_1 60 133 IPR000504 GO:0003723
Cca07g00990 295 MobiDBLite consensus disorder prediction 133 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00990 Cca-Chr7 20272022 20275312 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00990 6 173 Eukaryotic Initiation Factors Gene Family AT1G22760 25.581 2.46e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00990 K12741 K14314 gmx:100813165 404.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00990 07 20272022 20275312 Cca07g00990 07 20272022 20275312 ECH