Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00988 ATGGGGCCACCTGTTAATGGGGTTGATTCTTTATCAGAGGTTCAGAATTCGGTTTCTGTGGTAGATCATGGTCCTTCTTCAACATCTGAGATTCCTGGGCCTTCTCGGCCTCCGATAAGAGCATCTAAAAATAATGGGGCTTCTTCCAGTCAGCAAAATTATGGAATGAAGACTGTACACCACCAAAAGCATCCCGATCAGGTGGTTGACAATGTGGAGCGTGACGGAACGTCAGATATGGAGAAGCAGTATTATAATGTTAACGGAAAATCTGATTATGTAAGCCTCAATAAATCTGTTGAAAGTTGTTTAGGAAAGAATATCTCCACAATGGAAGCAAAATTAAGCATCAAGCAACCATTAGACTCTTCCAAGAATTGTGATTATAGTGGCGAATTAGAATCTGACAATTGCAAATTAGGTTCATCAAAAGGAGTTGTTGATCAAACAAAGAGTTACTGTCAATCAGAGATTACTTTTTGTCCAAGTCCTCAGAATAGTTTCTATTCAGAAGCCAAGGATAGTTTTGCCAATACTGGAGTCAGTGAATGTGTTAGTGTTGATAAGTCAATTGAAAGTGGAGAAGTTACTAATTCCTGCGAATTTAATGAGAGCAGGAAGACCAGTATCTGTAGAGGGAGTACTGGAAGTGACATCAGTGATGAGAGCAGCACCAGTAGTTTGAGCAGTGCTTTGTATAAACCCCACAAGGCAAATGATATTCGATGGGAAGCAATTCAAGCAATCCGAGTCCGTTATGGGGTGTTGGAAATGAGACATTTTAGATTGTTGAAGAAATTGGGATGTGGAGACATAGGAAGCGTATATCTAGCTGAATTAAGTGGCACAAGGACTTGTTTTGCCATGAAAGTAATGAACAAAACCGAGCTGGCAAGTCGCAAGAAGCTTGTTAGATCTCAGACAGAGAGAGAGATTCTGCAGTCTCTAGATCATCCATTTCTACCAACATTATACACACACTTTGAGACAGAGACATTCTCCTGCTTGGTAATGGAGTTTTGCCCTGGTGGGGACTTGCATGCACTCAGGCAGAGACAACCTGGGAAGTATTTTCCTGAGATTGCTGCCAGGTTCTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTCGGCGTCATCTACAGAGACCTTAAGCCAGAGAATGTGTTGGTGAGAGAAGATGGCCATATAATGCTCTCAGATTTTGATCTCTCTCTAAGGTGTGCTGTCAGTCCTACTCTGGTGAAGTCATCAAACACTAGCTTGGAAACAAAAAGCTCAGGATACTGCATTCAGCCTGCCTGCATTGAGCCAACTTGTGTAATACAACCAGATTGCATTCAACCTTCATGCTTCACACCACGCTTTCTCTCTGGAAAATCCAAGAAAGATAAAAAGTCAAAGCAAAAAAATGATGTGCAAAATCAGGTGACCCCTCTACCTGAGCTTATTGCCGAGCCCACGAATGCTCGATCAATGTCCTTCGTGGGGACACACGAGTACCTGGCACCTGAGATCATCAAAGGTGAAGGGCATGGCAGCGCCGTGGACTGGTGGACTTTTGGAATATTCTTATACGAGCTCTTGTTCGGTAGAACACCGTTCAAAGGTTCGGCGAACCGAGCAACGCTGTTTAATGTTGTTGGCCAGCCCTTGAAGTTTCCAGAATCCCCTACTGTCAGCTTTGCTGCCAGGGACTTGATAAGGGGTTTACTTGTGAAGGAGCCTCAGAATCGCCTTGCATATAGACGTGGAGCTACCGAAATAAAACAACATCCATTCTTTCATAATGTTAACTGGGCACTGATCCGATGTGCAAATCCTCCAGAAGTTCCAAGAATGGCCATGAAAGCACATTCAGCTGAAAAGGTGCCTGGTGTGAAGCCTTCTGGTAACTATTTAGATATTGATTTCTTTTGA 1929 0.4323 MGPPVNGVDSLSEVQNSVSVVDHGPSSTSEIPGPSRPPIRASKNNGASSSQQNYGMKTVHHQKHPDQVVDNVERDGTSDMEKQYYNVNGKSDYVSLNKSVESCLGKNISTMEAKLSIKQPLDSSKNCDYSGELESDNCKLGSSKGVVDQTKSYCQSEITFCPSPQNSFYSEAKDSFANTGVSECVSVDKSIESGEVTNSCEFNESRKTSICRGSTGSDISDESSTSSLSSALYKPHKANDIRWEAIQAIRVRYGVLEMRHFRLLKKLGCGDIGSVYLAELSGTRTCFAMKVMNKTELASRKKLVRSQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFPEIAARFYVAEVLLALEYLHMLGVIYRDLKPENVLVREDGHIMLSDFDLSLRCAVSPTLVKSSNTSLETKSSGYCIQPACIEPTCVIQPDCIQPSCFTPRFLSGKSKKDKKSKQKNDVQNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSANRATLFNVVGQPLKFPESPTVSFAARDLIRGLLVKEPQNRLAYRRGATEIKQHPFFHNVNWALIRCANPPEVPRMAMKAHSAEKVPGVKPSGNYLDIDFF 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00988 642 MobiDBLite consensus disorder prediction 41 58 - -
Cca07g00988 642 ProSitePatterns Serine/Threonine protein kinases active-site signature. 382 394 IPR008271 GO:0004672|GO:0006468
Cca07g00988 642 SMART serkin_6 261 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00988 642 MobiDBLite consensus disorder prediction 1 68 - -
Cca07g00988 642 Gene3D Transferase(Phosphotransferase) domain 1 347 615 - -
Cca07g00988 642 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL3 4 642 - -
Cca07g00988 642 CDD STKc_phototropin_like 259 616 - -
Cca07g00988 642 MobiDBLite consensus disorder prediction 9 30 - -
Cca07g00988 642 Pfam Protein kinase domain 495 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00988 642 Pfam Protein kinase domain 262 415 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00988 642 Gene3D Phosphorylase Kinase; domain 1 254 346 - -
Cca07g00988 642 ProSiteProfiles Protein kinase domain profile. 261 598 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca07g00988 642 SUPERFAMILY Protein kinase-like (PK-like) 237 620 IPR011009 -
Cca07g00988 642 MobiDBLite consensus disorder prediction 462 482 - -
Cca07g00988 642 PANTHER FLIPPASE KINASE 1-RELATED 4 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00988 Cca-Chr7 20167532 20171900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00988 165 642 AGC Kinase Gene Family AT5G47750 70.565 0.0 699
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Cca07g00988 Pkinase 1.1e-36 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00988 07 20167532 20171900 Cca07g00988 07 20167532 20171900 ECH