Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00987 ATGGAGAAAGAGGTTGTGGAAAACCTTTGGAATGGTAACACAGAAATGCAAATTCAAGCAGCTATGGAACTCAGGAAATTCAGCAGAAGGCAGAGGCACAATTTGGCAGAAAGTGGAGTTATGGTACCCCTAATTTCCATGCTTCATTCTCAAAACTATGAAGCCGTTGAAGCTTCTCTTTGTGCTCTACTTAGCCTTGCCTTTGGAAGTGAAAGAAACAAGTCTCGGATCATCAAGTCAGGAGCATTGCCAGTGTTGCTGAGTCTCTTCCATTGCCAAAGCCAGACAGTGGTGGAACTGACAATAGCCACATTGCTAACCATCTCTTCTTGCAACTCAAATAAGGTAGCAATTGCTTCCTCTGGGGCTATCCAACTCTTGGCACAATTTCTCAATAGCAATAGTAGCACTCAGTCCCAGCTTGACACATTAGCCACTCTCCACAACCTCTCAACCTGCCAAGAGATTATTACTACATTCATTGTCTCTTCTGGGGTCCTACTTTCCTTGCTTGAACTTATCCACAGATCAGAAAAGTCATCCACATTGGTTGACAAAGCAATTGGGTTGCTAGAACACATTGTCTCTTCATCAAAGAGTGCACTTTGTGAGGCTGCTAGTATTGGTGGAGCAGTTAGGACACTAGTGGAGACTATTGAAGATGGGTCATTTCAAAGCAAAGAGCATGCAGTGGCGACACTACTACTTTTTTGCCAAAGCTGCAGAGAGAAGTACAGAGGAATGATCCTGAGAGAGGGAGTGATGCCAGGGTTGCTTCAGTTAAGTGTGGATGGAACTTGGAGAGCCAGAAATTTGGCCAAGAAATTGTTGCTGCTTCTGAGGGATTGCTCCAATTACGGTTCAACAAGTAAGCAAATTAATCATGAGGTTGTAGAACGGATCATGGAAGAAATTGATGATGTCGAAGGAGAGGAATTGGCTGAGACTACGCTGAGATTGGTTGAGGAGATGGTTGCAAAACTTAGTACATAA 993 0.4371 MEKEVVENLWNGNTEMQIQAAMELRKFSRRQRHNLAESGVMVPLISMLHSQNYEAVEASLCALLSLAFGSERNKSRIIKSGALPVLLSLFHCQSQTVVELTIATLLTISSCNSNKVAIASSGAIQLLAQFLNSNSSTQSQLDTLATLHNLSTCQEIITTFIVSSGVLLSLLELIHRSEKSSTLVDKAIGLLEHIVSSSKSALCEAASIGGAVRTLVETIEDGSFQSKEHAVATLLLFCQSCREKYRGMILREGVMPGLLQLSVDGTWRARNLAKKLLLLLRDCSNYGSTSKQINHEVVERIMEEIDDVEGEELAETTLRLVEEMVAKLST 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00987 330 Gene3D - 1 158 IPR011989 -
Cca07g00987 330 SUPERFAMILY ARM repeat 4 308 IPR016024 -
Cca07g00987 330 Gene3D - 159 328 IPR011989 -
Cca07g00987 330 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 81 123 IPR000225 GO:0005515
Cca07g00987 330 PANTHER U BOX DOMAIN-CONTAINING 1 309 - -
Cca07g00987 330 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 309 - -
Cca07g00987 330 SMART arm_5 153 196 IPR000225 GO:0005515
Cca07g00987 330 SMART arm_5 111 152 IPR000225 GO:0005515
Cca07g00987 330 SMART arm_5 70 110 IPR000225 GO:0005515
Cca07g00987 330 SMART arm_5 28 68 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00987 Cca-Chr7 20095130 20098704 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00987 44 282 U-box Gene Family AT1G24330 33.333 5.12e-26 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00987 - - gmx:100811007 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00987 07 20095130 20098704 Cca07g00987 07 20095130 20098704 ECH