Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00975 ATGGCTAGGAGCTGGCTTATTGACATTGGAGGATTTGCAAAGAAAGTGAAAAGCAATACTCAATCTTCAGCTGATCAAATCAAGGATTGTGGAGCATATCGTGAATGTCCAAAGTGTAACTGTCATATTGATAACAGTGATGTTTCTGCTGAGTGGCCTGGGTTTCCTCTTGGTGTAAAGTTTGATCCTTCTGACGTAGAACTCTTAGAACATTTAGCAGAAAAATGTGGCATTGGGAGCACACAGCCACACATGTTTATCAATGAGTTCATCCCAACGCTGGAAGGAGACGAAGGTATTTGCTACACACATCCAGAAAATCTTCCAGGTGCTAAAAAAGATGGGCGTTATGTCCATTTTTTCCACAGGACAATCAATGCATATGCTACTGGTCAAAGAAAGCGTCGAAAGATTAATGATCATGGTTTGACTGAAGAGCATGTGCGCTGGCATAAGACTGGTAAGACAAAAGCTATAATAGAAGATGGAGTACATAAGGGCTTTAAGAAAATCATGGTTCTTTATTTAAAATCTAAGAATGGGCCCAAGCCCTATAAATCCAATTGGGTAATGCATCAGTACCATCTGGGGACCGGAGAAGATGAGAAGGAAGGTGCATATGTCGTTTCAAAAATCTTTTATCAACAGCGAAATCATACTGAGAAAAATGAGGAGAATCCAATGACTGAAGATCCTGACAATATGACATTGCGAACAAGTCCAAGGACACCAAAACCAAACCCTCCCAATCCGCCTCGTGTGGGAAAGTCTGTTGATTGCGATGATAACATTGATGAAACTTTACTTCTGTCTTTTGCACAGGATACCAAGACAATCCCTGAAGAATCACATGCCCCACTATCTGCTATTCCGGATGAAGACAATACTGGCAACATTGCATGGTTAGCTGGTGAATCACAGGCTGAGGAAAACACTGATGAATATAATGGCTTAGACGACATATTGTTGTGCAAGGAGATCTTAGATTCTTCTGTGTTGAATGATTCTGGATTGGACTCCATcaatctcaatgacaatgcatgctatgaaaacgaaatggctagaaatgacaatgTATCTTGCGGAATTTCTGTCCTGGATACACTGGAATTAGATACTCCAGATTTTGATATTTCTAATTGGAATTTTGGTTCTCAAGACAGTATCCTTGAGTGGATCAATAGGTTATGA 1191 0.3862 MARSWLIDIGGFAKKVKSNTQSSADQIKDCGAYRECPKCNCHIDNSDVSAEWPGFPLGVKFDPSDVELLEHLAEKCGIGSTQPHMFINEFIPTLEGDEGICYTHPENLPGAKKDGRYVHFFHRTINAYATGQRKRRKINDHGLTEEHVRWHKTGKTKAIIEDGVHKGFKKIMVLYLKSKNGPKPYKSNWVMHQYHLGTGEDEKEGAYVVSKIFYQQRNHTEKNEENPMTEDPDNMTLRTSPRTPKPNPPNPPRVGKSVDCDDNIDETLLLSFAQDTKTIPEESHAPLSAIPDEDNTGNIAWLAGESQAEENTDEYNGLDDILLCKEILDSSVLNDSGLDSINLNDNACYENEMARNDNVSCGISVLDTLELDTPDFDISNWNFGSQDSILEWINRL 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00975 396 SUPERFAMILY NAC domain 39 215 IPR036093 GO:0003677|GO:0006355
Cca07g00975 396 MobiDBLite consensus disorder prediction 218 258 - -
Cca07g00975 396 Pfam No apical meristem (NAM) protein 56 196 IPR003441 GO:0003677|GO:0006355
Cca07g00975 396 ProSiteProfiles NAC domain profile. 55 215 IPR003441 GO:0003677|GO:0006355
Cca07g00975 396 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 1 394 - -
Cca07g00975 396 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 1 394 IPR044799 GO:0003700
Cca07g00975 396 Gene3D NAC domain 64 220 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00975 Cca-Chr7 19503948 19507991 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00975 36 236 NAC Transcription Factor Family AT1G28470 49.515 2.67e-61 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Cca07g00975 NAM 4.3e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00975 - - gmx:100780442 645.966
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca07g00975 07 19503948 19507991 Cca07g00975 07 19503948 19507991 ECH