Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00972 atggaggtggtATTTCTTCAGAATTACATTCAAACCCTGAGAGCCGGTGGCGCTAATGTTCAGTTCGTAATTGACAACTCTGGGGACCCCACCGGAGCATTTCGTCTCCCCGCAAATCTCAACCTTGGTGATTACTTCTTTGGGCCGGGTCTCGAGCAATTGATTCAGCACCTTGCGGAGAACGATCCTAACCGGTATGGGACACCCCCGGCCTCCAAGTCTGCCATCGAGGGGCTCCCTAACATCCCAATTACGGAGGAGTTGCTGGCCACGGATTCATCACAGTGTGCGGTGTGTAAAGACACGTTCGAGCTTCGGGAATTGGCCAAGCAGATGCCCTGCAAACACATCTATCATTCTGATTGCATCCTGCCTTGGCTGGAATTGCACAATTCTTGTCCTGTGTGTCGGTATGAGTTACCTACTGATGATCCTGACTACGAGCAAAGGGCTCGCGGTCAATCTACAGCTGCTAGTGCTGATTCTTCTGCTGATACAGACACCTCACAGTCACCCAGCGAGCGGAGCTTTAGGGTTTCTTTGCCCTGGCCCTTTAGGCAGTTTTCTTCCGTTGCGGAGACGAGCAATAACAATGGAAACACTACTGGGGATTCTAATCAGCCAGAAACCAGGCAAGAAGATCTTGATTGA 651 0.5008 MEVVFLQNYIQTLRAGGANVQFVIDNSGDPTGAFRLPANLNLGDYFFGPGLEQLIQHLAENDPNRYGTPPASKSAIEGLPNIPITEELLATDSSQCAVCKDTFELRELAKQMPCKHIYHSDCILPWLELHNSCPVCRYELPTDDPDYEQRARGQSTAASADSSADTDTSQSPSERSFRVSLPWPFRQFSSVAETSNNNGNTTGDSNQPETRQEDLD 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00972 216 ProSiteProfiles Zinc finger RING-type profile. 96 137 IPR001841 -
Cca07g00972 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 3 183 - -
Cca07g00972 216 MobiDBLite consensus disorder prediction 187 208 - -
Cca07g00972 216 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 56 143 IPR013083 -
Cca07g00972 216 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1 3 183 - -
Cca07g00972 216 MobiDBLite consensus disorder prediction 152 177 - -
Cca07g00972 216 Pfam Ring finger domain 95 137 IPR001841 -
Cca07g00972 216 MobiDBLite consensus disorder prediction 147 216 - -
Cca07g00972 216 CDD RING-H2_RNF126_like 95 137 - -
Cca07g00972 216 SUPERFAMILY RING/U-box 84 144 - -
Cca07g00972 216 SMART ring_2 96 136 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00972 Cca-Chr7 19199992 19200642 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00972 37 152 C3H Transcription Factor Family AT5G01980 50.000 3.11e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00972 - K11982 ccaj:109806329 425.246