Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca07g00941 ATGGATGCTTCAAAATCCTTTGCGAGAAGACACGAAGAACGGTCCCTTACTCCATCATCAGCCTCTGTGAAACACAGGAAGGTGAAACAAGCATTGGTGACACTTAGGAACTTGTTTCACAAACTAATGCATCAATACAATGCAGACCAACCCGGAAATTCGAAGGGTAAAACAGAAGTTCTGGTGGAAGCAGCAATGATAATGCAAAGAGAGCATCAATGGGAGAACACTAGAAAGATTGTGGGACATGTATCAGGAATTGAAGTTGGTGATCGGTTTCAATACAGGGCTGAACTTAATGTTATTGGCCTCCATCGACAATTTTCAAATGGCATTGATTATATGTCTAAGGGGAGTAGTTCATTGGCCACCAGCGTAGTTGTAACCAATCGATATGATAATGTTCGTTGGAAATCTGGTATGGTGGTTTACATAGGTCATGGAGGAGGAAATCCTAATGTGAAGAGTAATGTTTCATTTCATGATCAAAAGTTGGAAAGAGGAAATTTGGCTTTGAAGAATAGTATGGATGCTAAAAGTCCGGTGAGGGTTATATTGAAGGTTGAAGAAAAATTTAATGTTGTGGACAATTACACTGACAGTAGTTCTAACTTCTCATATGTTTATGATGGCTTGTACTTTGTGGATACAATGATACAGGAAAGAGGAAGAAGTGGAAAGTTTGTGTTCAAGTTTATACTGAAGAGAATGTTAGAACAACCCCAAACTTGTGTTGCTCTTAAGGGTGATGTTATGGACAATGCTGGCAATTCAGGGACATTTGCAAGAATTACTCCCAACAAAAGACACAAATCTAGAGGATGTTTAGTTCAAAAGGATGTTGTTCGAATAAATGATATTTCAGAAGGAAAAGAAAAATTTCCTATTCGGGTGGTGACACCGAAGGATTGTGTTCAGATACTTCCATCCTTCAATTACATAGTTGGTAACATTTATTCAGAGGTGTTCACACAGCCAATTTTATGTGGATGTGATTGTGCAGATGGATGTGTGGACCACAAGAAATGTGCTTGCAATGTTAAGAATGGTGGAAGAATGCCATATGATTGTAACAAAAGACTTGCGTCTCTCATGGAATCATCACTTATATATGAGTGTGGCCCTTCTTGCAGGTGTTCCTCATCTTGCACCAATCGAGTTAGTCAGCATGGTATTCAGTTCCAACTAGAAATCTTCATGACAAAATTGAAAGGTTGGGGTGTTAGAGCACGCTCATTCATCCCCTCCAGAAGCTTTGTATGTGCATACCTTGGGGAAGTCCGTAACAACAGACACTGTGAATCAAGACCAGATTTTGATGACTATATACTTAAGATTGGTGTCGGCAAGGGCTTCATTGATGCATCAAGATGCGGGAACATTGGAAGATTTATAAATCACAGTTGTTCTCCTAATCTCATTGTCAAGGATGTTACAAATGATCACAGTGATAAGAACCTTCCATATAAGGTGCTGTTTGCAGTTAAGGACATACCTGCTGTTGCTACTGTGAAGCACGGGAATGCAATGGAAAAATCTACATTTAAAGTGCAACAAAATGACACAAGCTGA 1572 0.3938 MDASKSFARRHEERSLTPSSASVKHRKVKQALVTLRNLFHKLMHQYNADQPGNSKGKTEVLVEAAMIMQREHQWENTRKIVGHVSGIEVGDRFQYRAELNVIGLHRQFSNGIDYMSKGSSSLATSVVVTNRYDNVRWKSGMVVYIGHGGGNPNVKSNVSFHDQKLERGNLALKNSMDAKSPVRVILKVEEKFNVVDNYTDSSSNFSYVYDGLYFVDTMIQERGRSGKFVFKFILKRMLEQPQTCVALKGDVMDNAGNSGTFARITPNKRHKSRGCLVQKDVVRINDISEGKEKFPIRVVTPKDCVQILPSFNYIVGNIYSEVFTQPILCGCDCADGCVDHKKCACNVKNGGRMPYDCNKRLASLMESSLIYECGPSCRCSSSCTNRVSQHGIQFQLEIFMTKLKGWGVRARSFIPSRSFVCAYLGEVRNNRHCESRPDFDDYILKIGVGKGFIDASRCGNIGRFINHSCSPNLIVKDVTNDHSDKNLPYKVLFAVKDIPAVATVKHGNAMEKSTFKVQQNDTS 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca07g00941 523 Gene3D SET domain 262 503 IPR046341 -
Cca07g00941 523 ProSiteProfiles YDG domain profile. 82 236 IPR003105 -
Cca07g00941 523 MobiDBLite consensus disorder prediction 1 20 - -
Cca07g00941 523 ProSiteProfiles Pre-SET domain profile. 329 391 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca07g00941 523 Gene3D - 63 256 IPR036987 -
Cca07g00941 523 SMART G9a_1 77 240 IPR003105 -
Cca07g00941 523 MobiDBLite consensus disorder prediction 1 24 - -
Cca07g00941 523 SMART preset_2 284 378 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca07g00941 523 Pfam SAD/SRA domain 81 240 IPR003105 -
Cca07g00941 523 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 17 501 - -
Cca07g00941 523 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH6 17 501 - -
Cca07g00941 523 SUPERFAMILY PUA domain-like 64 245 IPR015947 -
Cca07g00941 523 SMART set_7 394 513 IPR001214 GO:0005515
Cca07g00941 523 Pfam SET domain 405 500 IPR001214 GO:0005515
Cca07g00941 523 SUPERFAMILY SET domain 276 500 IPR046341 -
Cca07g00941 523 Pfam Pre-SET motif 287 386 IPR007728 GO:0005634|GO:0008270|GO:0018024|GO:0034968
Cca07g00941 523 ProSiteProfiles SET domain profile. 394 509 IPR001214 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca07g00941 Cca-Chr7 17613157 17615649 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca07g00941 76 506 Su(var)3-9 homologs AT1G73100 33.833 2.07e-68 230
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Cca07g00941 SAD_SRA 6.6e-40 CL0178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca07g00941 - - gmx:100807574 671.389